Dear Rick,

my .afnirc already contains the AFNI_NIFTI_VIEW = orig
I have added: setenv AFNI_NIFTI_VIEW orig to the proc. file at the very top... but the same error was returned.

Should I use 3dcopy to convert my nii file into BRIK & HEAD and make sure they are +orig?

thank you

Ilaria

UPDATE:
I have also converted my anat and func files with 3dcopy for the subject and the same message returned. I thought this would have resolved the issue if it was a file type problem. I guess it might be in the blocks or specs I have selected?
this it a copy of the proc file

afni_proc.py -subj_id provaOrig
-blocks tshift align tlrc volreg blur mask scale regress
-copy_anat /Users/nens.lab/Documents/PEN802_Spring2019/Scans/sub-006/ses-T1/anat/sub-006_ses-T1_T1w+orig.BRIK
-dsets /Users/nens.lab/Documents/PEN802_Spring2019/Scans/sub-006/ses-T1/func/sub-006_ses-T1_task-Sub_run-01_bold+orig.BRIK
/Users/nens.lab/Documents/PEN802_Spring2019/Scans/sub-006/ses-T1/func/sub-006_ses-T1_task-Sub_run-02_bold+orig.BRIK
-align_opts_aea
-cost lpc+ZZ
-tshift_interp -quintic
-tlrc_base HaskinsPeds_NL_template1.0+tlrc
-tlrc_NL_warp
-volreg_align_to MIN_OUTLIER
-volreg_align_e2a
-volreg_tlrc_warp
-regress_motion_per_run
-regress_censor_motion 0.3
-regress_censor_outliers 0.1
-regress_reml_exec
-regress_stim_times /Users/nens.lab/Documents/PEN802_Spring2019/Scans/sub-006/ses-T1/stim/ETrue.tsv
/Users/nens.lab/Documents/PEN802_Spring2019/Scans/sub-006/ses-T1/stim/HTrue.tsv
/Users/nens.lab/Documents/PEN802_Spring2019/Scans/sub-006/ses-T1/stim/EFalse.tsv
/Users/nens.lab/Documents/PEN802_Spring2019/Scans/sub-006/ses-T1/stim/HFalse.tsv
/Users/nens.lab/Documents/PEN802_Spring2019/Scans/sub-006/ses-T1/stim/control_s.tsv
-regress_stim_labels ET HT EF HF Ctrl_s
-regress_basis GAM
-regress_opts_3dD
-jobs 4
-gltsym SYM: HTrue - ETrue -glt_label 1 Ht-Et
-gltsym SYM: HFalse - EFalse -glt_label 2 Hf-Ef
-regress_est_blur_epits
-regress_est_blur_errts


your help is greatly appreciated!
Ilaria



Edited 2 time(s). Last edit at 02/20/2019 02:23PM by Ilaria.