AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 21, 2019 04:46PM
I find suma can effectively show most kinds of data. As long as you make clear the analysis was done volumetrically and how you mapped data to the surface, it is fine to display results with suma onto some standard surface. Note when suma talks with afni, the overlay in the afni GUI is sent to the suma GUI and colors the surfaces. By default, that coloring is done just at the intersections of the surface nodes with the volume. The Vol2surf plugin in afni gives controls that are similar to the 3dVol2Surf program, and offers a variety of ways to more effectively show data from within the volume onto the surface - like reaching into the volume to find a maximum, minimum, mean or median. Also regarding the other direction of mapping data from the surface to the volume (on the command line only), the program, 3dSurf2Vol, and the script, @surf_to_vol_spackle give a multitude of choices.
Subject Author Posted

t-value higher in surface computation than volume computation

Liu Mengxing February 19, 2019 12:23PM

Re: t-value higher in surface computation than volume computation

gang February 20, 2019 12:30PM

Re: t-value higher in surface computation than volume computation

Daniel Glen February 20, 2019 08:27PM

Re: t-value higher in surface computation than volume computation

Liu Mengxing February 21, 2019 06:09AM

Re: t-value higher in surface computation than volume computation

Daniel Glen February 21, 2019 04:46PM