AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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rick reynolds
February 21, 2019 02:03PM
Hi Andrew,

Note that the -*opts_* options in afni_proc.py (like your -regress_opts_3dD, which contains -GOFORIT) are for passing options that are unprocessed by afni_proc.py directly to sub-programs. That is to say, afni_proc.py does not know that you passed -GOFORIT to 3dDeconvolve. So since you are also running 3dREMLfit, -GOFORIT needs to be passed along there, too.

On the filp side, it would probably make sense for that option to be automatically passed along by 3dDeconvolve. But as it stands, that is not done.

So for now, add "-regress_opts_reml -GOFORIT" to the afni_proc.py command.

- rick
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Subject Author Posted

Where to add GOFORIT for 3dREMLfit?

Andrew Erhart February 21, 2019 12:12PM

Re: Where to add GOFORIT for 3dREMLfit?

rick reynolds February 21, 2019 02:03PM

Re: Where to add GOFORIT for 3dREMLfit?

Andrew Erhart February 21, 2019 03:19PM

Re: Where to add GOFORIT for 3dREMLfit?

rick reynolds February 21, 2019 04:27PM