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Galit

March 19, 2019 05:37AM

Registered: 7 years ago
Posts: 59

Gang, thank you for the reply!
Is MVM still the right thing to do, even if I am interested in the covariate (i.e. Root_Fluency and Phon_Fluency), while controlling for the categorical variable (Morph)?
Also, when trying to run 3dMVM I still get an error. This is my script:

3dMVM -prefix MVM_GROUP_LEVEL_fluency2 -jobs 2 \
-wsVars Morph \
-bsVars "Root_fluency+Phon_fluency" \
-qVars "MIE,Root_fluency,Phon_fluency,WM,Age" \
-num_glt 2 \
-gltLabel 1 RootFluency_effect -gltCode 1 'Morph : 1*words -1*scrambled Root_fluency :' \
-gltLabel 2 PhonFluency_effect -gltCode 2 'Morph : 1*words -1*scrambled Phon_fluency :' \
-dataTable \
Subj    Sex     Age    WM      	MIE  	Phon_fluency   Root_fluency 	Morph 		InputFile \ 
S05 	male  	30    7.25 	0.226   49 		29 		words  		S05.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S05 	male  	30    7.25 	0.226   49   		29 		scrambled  	S05.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S03 	male 	28    6.00 	0.2248  37 		29 		words 		S03.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S03 	male 	28    6.00 	0.2248  37 		29 		scrambled 	S03.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S04 	male 	34    6.00 	0.3673  56 		27 		words 		S04.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S04 	male 	34    6.00  	0.3673  56 		27 		scrambled 	S04.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S07 	female 	24    6.50  	0.1125  41 		21 		words 		S07.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S07 	female 	24    6.50  	0.1125  41 		21 		scrambled 	S07.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S08 	male 	24    6.75 	0.119   47 		24 		words 		S08.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S08 	male 	24    6.75 	0.119   47 		24 		scrambled 	S08.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S09 	male 	26    6.00 	0.1767  56 		24 		words 		S09.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S09 	male 	26    6.00 	0.1767  56 		24 		scrambled 	S09.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S14 	male 	30    7.00 	0.0637  47 		35 		words 		S14.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S14 	male 	30    7.00 	0.0637  47 		35 		scrambled 	S14.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S12 	male 	24    4.75 	0.399   52 		34 		words 		S12.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S12 	male 	24    4.75 	0.399   52 		34 		scrambled 	S12.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S10 	female 	24    5.50 	0.1258  36 		32 		words 		S10.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S10 	female 	24    5.50 	0.1258  36 		32 		scrambled 	S10.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S11 	female 	25    5.00 	0.3598  36 		28 		words 		S11.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S11 	female 	25    5.00 	0.3598  36 		28 		scrambled 	S11.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S16 	female 	34    5.25 	0.1167  51 		31 		words 		S16.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S16 	female 	34    5.25 	0.1167  51 		31 		scrambled 	S16.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S13 	female 	30    7.25 	0.241   29 		39 		words 		S13.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S13 	female 	30    7.25 	0.241   29 		39 		scrambled 	S13.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S15 	male 	28    7.50 	0.0925  60 		51 		words 		S15.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S15 	male 	28    7.50 	0.0925  60 		51 		scrambled 	S15.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S17 	male 	26    7.25 	0.1849  38 		33 		words 		S17.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S17 	male 	26    7.25 	0.1849  38 		33 		scrambled 	S17.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S19 	female 	27    5.75 	0.1159  46 		31 		words 		S19.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S19 	female 	27    5.75 	0.1159  46 		31 		scrambled 	S19.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S18 	male 	25    4.75 	0.1808  50 		35 		words 		S18.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S18 	male 	25    4.75 	0.1808  50 		35 		scrambled 	S18.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S21 	female 	23    5.75 	0.153   42 		40 		words 		S21.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S21 	female 	23    5.75 	0.153   42 		40 		scrambled 	S21.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S20 	female 	27    6.50 	0.1276  45 		32 		words 		S20.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S20 	female 	27    6.50 	0.1276  45 		32 		scrambled 	S20.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S22 	female 	22    5.25 	0.1018  37 		29 		words 		S22.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S22 	female 	22    5.25 	0.1018  37 		29 		scrambled 	S22.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S23 	female 	26    6.00 	0.1453  46 		38 		words 		S23.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S23 	female 	26    6.00 	0.1453  46 		38 		scrambled 	S23.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S38 	female 	31    4.75 	0.092   68 		38 		words 		S38.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S38 	female 	31    4.75 	0.092   68 		38 		scrambled 	S38.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S24 	female 	21    5.25 	0.113   30 		20 		words 		S24.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S24 	female 	21    5.25 	0.113   30 		20 		scrambled 	S24.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S25 	female 	33    5.00 	0.1435  28 		19	 	words 		S25.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S25 	female 	33    5.00 	0.1435  28 		19	 	scrambled 	S25.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S27 	female 	27    7.25 	0.3087  44 		35 		words 		S27.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S27 	female 	27    7.25 	0.3087  44 		35 		scrambled 	S27.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S28 	female 	21    6.50 	0.3086  40 		26 		words 		S28.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S28 	female 	21    6.50 	0.3086  40 		26 		scrambled 	S28.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S31 	female 	23    4.25 	0.1218  17 		25	 	words 		S31.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S31 	female 	23    4.25 	0.1218  17 		25 		scrambled 	S31.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S34 	male 	27    6.00 	0.1976  54 		32 		words 		S34.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S34 	male 	27    6.00 	0.1976  54 		32 		scrambled 	S34.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S29 	female 	24    6.75 	0.1501  42 		28 		words 		S29.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S29 	female 	24    6.75 	0.1501  42 		28 		scrambled 	S29.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S26 	female 	21    6.75 	0.1446  46 		38 		words 		S26.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S26 	female 	21    6.75 	0.1446  46 		38 		scrambled 	S26.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S30 	female 	24    6.25 	0.1889  45 		27 		words 		S30.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S30 	female 	24    6.25 	0.1889  45 		27 		scrambled 	S30.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S43 	female 	20    6.00 	0.1816  39 		35 		words 		S43.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S43 	female 	20    6.00 	0.1816  39 		35 		scrambled 	S43.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S33 	male 	27    7.00 	0.1703  43 		27 		words 		S33.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S33 	male 	27    7.00 	0.1703  43 		27 		scrambled 	S33.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S32 	female 	30    6.75 	0.1353  37 		40 		words 		S32.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S32 	female 	30    6.75 	0.1353  37 		40 		scrambled 	S32.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S36 	male 	24    4.25 	0.1452  38 		27 		words 		S36.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S36 	male 	24    4.25 	0.1452  38 		27 		scrambled 	S36.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S35 	female 	21    5.25 	0.0276  32 		30 		words 		S35.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S35 	female 	21    5.25 	0.0276  32 		30 		scrambled 	S35.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S39 	female 	24    5.75 	0.067   59 		37 		words 		S39.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S39 	female 	24    5.75 	0.067   59 		37 		scrambled 	S39.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S37 	female 	23    5.75 	0.1906  34 		25 		words 		S37.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S37 	female 	23    5.75 	0.1906  34 		25 		scrambled 	S37.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S47 	male 	24    6.00 	0.1217  47 		29 		words 		S47.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S47 	male 	24    6.00 	0.1217  47 		29 		scrambled 	S47.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S40 	female 	27    6.50 	0.1938  36 		34 		words 		S40.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S40 	female 	27    6.50 	0.1938  36 		34 		scrambled 	S40.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S41 	female 	22    5.00 	0.237   45 		40 		words 		S41.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S41 	female 	22    5.00 	0.237   45 		40 		scrambled 	S41.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S45 	male 	30    7.00 	0.1566  60 		41 		words 		S45.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S45 	male 	30    7.00 	0.1566  60 		41 		scrambled 	S45.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S42 	female 	21    5.75 	0.1215  36 		30 		words 		S42.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S42 	female 	21    5.75 	0.1215  36 		30 		scrambled 	S42.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S44 	female 	31    6.75 	0.1588  57 		35 		words 		S44.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S44 	female 	31    6.75 	0.1588  57 		35 		scrambled 	S44.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]' \ 
S46 	female 	32    5.00 	0.191   40 		25 		words 		S46.single_subject_GLM_MNI+tlrc'[Words#0_Coef]' \ 
S46 	female 	32    5.00 	0.191   40 		25 		scrambled 	S46.single_subject_GLM_MNI+tlrc'[Scrambled#0_Coef]'

Reply Quote

RSS

Subject	Author	Posted
"model test failed" - errors in 3dLME, 3dMVM	Galit	March 14, 2019 09:34AM
Re: "model test failed" - errors in 3dLME, 3dMVM	gang	March 14, 2019 11:14AM
Re: "model test failed" - errors in 3dLME, 3dMVM	Galit	March 19, 2019 05:37AM
Re: "model test failed" - errors in 3dLME, 3dMVM	gang	March 19, 2019 10:16AM
Re: "model test failed" - errors in 3dLME, 3dMVM	Galit	March 19, 2019 11:06AM
Re: "model test failed" - errors in 3dLME, 3dMVM	gang	March 19, 2019 11:12AM
Re: "model test failed" - errors in 3dLME, 3dMVM	Galit	March 19, 2019 12:05PM
Re: "model test failed" - errors in 3dLME, 3dMVM	discoraj	March 22, 2019 10:08AM