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Dear AFNI users-

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The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Galit
March 19, 2019 11:06AM
It is as if the "\" in the end of each line is not recognized, so I get a lot of "Command not found" errors: 
3dMVM -prefix MVM_GROUP_LEVEL_fluency2 -jobs 2 -wsVars Morph -bsVars Root_fluency+Phon_fluency -qVars Root_fluency,Phon_fluency -num_glt 2 -gltLabel 1 RootFluency_effect -gltCode 1 Morph : 1*words -1*scrambled Root_fluency : -gltLabel 2 PhonFluency_effect -gltCode 2 Morph : 1*words -1*scrambled Phon_fluency : -dataTable Subj Sex Age WM MIE Phon_fluency Root_fluency Morph InputFile  
Error in seq.default(wd + ii, len, wd) : wrong sign in 'by' argument
Calls: process.MVM.opts -> data.frame -> cbind -> seq -> seq.default
Execution halted
S05 male 30 7.25 0.226 49 29 words S05.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S05: Command not found.
S05 male 30 7.25 0.226 49 29 scrambled S05.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S05: Command not found.
S03 male 28 6.00 0.2248 37 29 words S03.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S03: Command not found.
S03 male 28 6.00 0.2248 37 29 scrambled S03.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S03: Command not found.
S04 male 34 6.00 0.3673 56 27 words S04.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S04: Command not found.
S04 male 34 6.00 0.3673 56 27 scrambled S04.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S04: Command not found.
S07 female 24 6.50 0.1125 41 21 words S07.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S07: Command not found.
S07 female 24 6.50 0.1125 41 21 scrambled S07.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S07: Command not found.
S08 male 24 6.75 0.119 47 24 words S08.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S08: Command not found.
S08 male 24 6.75 0.119 47 24 scrambled S08.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S08: Command not found.
S09 male 26 6.00 0.1767 56 24 words S09.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S09: Command not found.
S09 male 26 6.00 0.1767 56 24 scrambled S09.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S09: Command not found.
S14 male 30 7.00 0.0637 47 35 words S14.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S14: Command not found.
S14 male 30 7.00 0.0637 47 35 scrambled S14.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S14: Command not found.
S12 male 24 4.75 0.399 52 34 words S12.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S12: Command not found.
S12 male 24 4.75 0.399 52 34 scrambled S12.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S12: Command not found.
S10 female 24 5.50 0.1258 36 32 words S10.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S10: Command not found.
S10 female 24 5.50 0.1258 36 32 scrambled S10.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S10: Command not found.
S11 female 25 5.00 0.3598 36 28 words S11.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S11: Command not found.
S11 female 25 5.00 0.3598 36 28 scrambled S11.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S11: Command not found.
S16 female 34 5.25 0.1167 51 31 words S16.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S16: Command not found.
S16 female 34 5.25 0.1167 51 31 scrambled S16.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S16: Command not found.
S13 female 30 7.25 0.241 29 39 words S13.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S13: Command not found.
S13 female 30 7.25 0.241 29 39 scrambled S13.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S13: Command not found.
S15 male 28 7.50 0.0925 60 51 words S15.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S15: Command not found.
S15 male 28 7.50 0.0925 60 51 scrambled S15.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S15: Command not found.
S17 male 26 7.25 0.1849 38 33 words S17.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S17: Command not found.
S17 male 26 7.25 0.1849 38 33 scrambled S17.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S17: Command not found.
S19 female 27 5.75 0.1159 46 31 words S19.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S19: Command not found.
S19 female 27 5.75 0.1159 46 31 scrambled S19.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S19: Command not found.
S18 male 25 4.75 0.1808 50 35 words S18.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S18: Command not found.
S18 male 25 4.75 0.1808 50 35 scrambled S18.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S18: Command not found.
S21 female 23 5.75 0.153 42 40 words S21.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S21: Command not found.
S21 female 23 5.75 0.153 42 40 scrambled S21.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S21: Command not found.
S20 female 27 6.50 0.1276 45 32 words S20.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S20: Command not found.
S20 female 27 6.50 0.1276 45 32 scrambled S20.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S20: Command not found.
S22 female 22 5.25 0.1018 37 29 words S22.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S22: Command not found.
S22 female 22 5.25 0.1018 37 29 scrambled S22.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S22: Command not found.
S23 female 26 6.00 0.1453 46 38 words S23.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S23: Command not found.
S23 female 26 6.00 0.1453 46 38 scrambled S23.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S23: Command not found.
S38 female 31 4.75 0.092 68 38 words S38.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S38: Command not found.
S38 female 31 4.75 0.092 68 38 scrambled S38.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S38: Command not found.
S24 female 21 5.25 0.113 30 20 words S24.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S24: Command not found.
S24 female 21 5.25 0.113 30 20 scrambled S24.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S24: Command not found.
S25 female 33 5.00 0.1435 28 19 words S25.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S25: Command not found.
S25 female 33 5.00 0.1435 28 19 scrambled S25.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S25: Command not found.
S27 female 27 7.25 0.3087 44 35 words S27.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S27: Command not found.
S27 female 27 7.25 0.3087 44 35 scrambled S27.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S27: Command not found.
S28 female 21 6.50 0.3086 40 26 words S28.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S28: Command not found.
S28 female 21 6.50 0.3086 40 26 scrambled S28.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S28: Command not found.
S31 female 23 4.25 0.1218 17 25 words S31.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S31: Command not found.
S31 female 23 4.25 0.1218 17 25 scrambled S31.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S31: Command not found.
S34 male 27 6.00 0.1976 54 32 words S34.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S34: Command not found.
S34 male 27 6.00 0.1976 54 32 scrambled S34.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S34: Command not found.
S29 female 24 6.75 0.1501 42 28 words S29.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S29: Command not found.
S29 female 24 6.75 0.1501 42 28 scrambled S29.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S29: Command not found.
S26 female 21 6.75 0.1446 46 38 words S26.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S26: Command not found.
S26 female 21 6.75 0.1446 46 38 scrambled S26.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S26: Command not found.
S30 female 24 6.25 0.1889 45 27 words S30.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S30: Command not found.
S30 female 24 6.25 0.1889 45 27 scrambled S30.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S30: Command not found.
S43 female 20 6.00 0.1816 39 35 words S43.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S43: Command not found.
S43 female 20 6.00 0.1816 39 35 scrambled S43.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S43: Command not found.
S33 male 27 7.00 0.1703 43 27 words S33.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S33: Command not found.
S33 male 27 7.00 0.1703 43 27 scrambled S33.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S33: Command not found.
S32 female 30 6.75 0.1353 37 40 words S32.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S32: Command not found.
S32 female 30 6.75 0.1353 37 40 scrambled S32.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S32: Command not found.
S36 male 24 4.25 0.1452 38 27 words S36.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S36: Command not found.
S36 male 24 4.25 0.1452 38 27 scrambled S36.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S36: Command not found.
S35 female 21 5.25 0.0276 32 30 words S35.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S35: Command not found.
S35 female 21 5.25 0.0276 32 30 scrambled S35.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S35: Command not found.
S39 female 24 5.75 0.067 59 37 words S39.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S39: Command not found.
S39 female 24 5.75 0.067 59 37 scrambled S39.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S39: Command not found.
S37 female 23 5.75 0.1906 34 25 words S37.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S37: Command not found.
S37 female 23 5.75 0.1906 34 25 scrambled S37.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S37: Command not found.
S47 male 24 6.00 0.1217 47 29 words S47.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S47: Command not found.
S47 male 24 6.00 0.1217 47 29 scrambled S47.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S47: Command not found.
S40 female 27 6.50 0.1938 36 34 words S40.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S40: Command not found.
S40 female 27 6.50 0.1938 36 34 scrambled S40.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S40: Command not found.
S41 female 22 5.00 0.237 45 40 words S41.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S41: Command not found.
S41 female 22 5.00 0.237 45 40 scrambled S41.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S41: Command not found.
S45 male 30 7.00 0.1566 60 41 words S45.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S45: Command not found.
S45 male 30 7.00 0.1566 60 41 scrambled S45.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S45: Command not found.
S42 female 21 5.75 0.1215 36 30 words S42.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S42: Command not found.
S42 female 21 5.75 0.1215 36 30 scrambled S42.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S42: Command not found.
S44 female 31 6.75 0.1588 57 35 words S44.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S44: Command not found.
S44 female 31 6.75 0.1588 57 35 scrambled S44.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]  
S44: Command not found.
S46 female 32 5.00 0.191 40 25 words S46.single_subject_GLM_MNI+tlrc[Words#0_Coef]  
S46: Command not found.
S46 female 32 5.00 0.191 40 25 scrambled S46.single_subject_GLM_MNI+tlrc[Scrambled#0_Coef]
S46: Command not found.

I get it now with other commands as well, so I'm starting to think that it is not a problem with 3dMVM but some more general syntax problem.

Age was defined in qVars, but not in bsVars, becuase I decided I don't want it in the model. I took it out of qVars as well - same result.
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Subject Author Posted

"model test failed" - errors in 3dLME, 3dMVM

Galit March 14, 2019 09:34AM

Re: "model test failed" - errors in 3dLME, 3dMVM

gang March 14, 2019 11:14AM

Re: "model test failed" - errors in 3dLME, 3dMVM

Galit March 19, 2019 05:37AM

Re: "model test failed" - errors in 3dLME, 3dMVM

gang March 19, 2019 10:16AM

Re: "model test failed" - errors in 3dLME, 3dMVM

Galit March 19, 2019 11:06AM

Re: "model test failed" - errors in 3dLME, 3dMVM

gang March 19, 2019 11:12AM

Re: "model test failed" - errors in 3dLME, 3dMVM

Galit March 19, 2019 12:05PM

Re: "model test failed" - errors in 3dLME, 3dMVM

discoraj March 22, 2019 10:08AM