AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 01, 2019 07:34AM
Dear AFNI expert,

I was downloading afni and everything went smoothly but suddenly my internet connection crashed for some reason when I was running the R packages installation command.
Then when I'm going to run the following command:

rPkgsInstall -pkgs ALL

but I got the following message

* installing *source* package ‘sf’ ...
** package ‘sf’ successfully unpacked and MD5 sums checked
configure: CC: gcc -std=gnu99
configure: CXX: g++ -std=gnu++11
checking for gdal-config... no
no
configure: error: gdal-config not found or not executable.
ERROR: configuration failed for package ‘sf’
* removing ‘/home/davide/R/sf’
ERROR: dependency ‘mvtnorm’ is not available for package ‘bridgesampling’
* removing ‘/home/davide/R/bridgesampling’
ERROR: dependency ‘sf’ is not available for package ‘spdep’
* removing ‘/home/davide/R/spdep’
ERROR: dependency ‘bridgesampling’ is not available for package ‘brms’
* removing ‘/home/davide/R/brms’

The downloaded source packages are in
‘/tmp/RtmpVPe7O3/downloaded_packages’

++ Note: @ 13:26:22
This package has been installed on the computer: brms

Warning messages:
1: In install.packages(pkgs_miss, dep = TRUE, repos = site) :
installation of package ‘sf’ had non-zero exit status
2: In install.packages(pkgs_miss, dep = TRUE, repos = site) :
installation of package ‘bridgesampling’ had non-zero exit status
3: In install.packages(pkgs_miss, dep = TRUE, repos = site) :
installation of package ‘spdep’ had non-zero exit status
4: In install.packages(pkgs_miss, dep = TRUE, repos = site) :
installation of package ‘brms’ had non-zero exit status

Any tips?

Thanks

Dave
Subject Author Posted

AFNI R packages installation issue

dmomi April 01, 2019 07:34AM

Re: AFNI R packages installation issue

ptaylor April 01, 2019 09:54AM

Re: AFNI R packages installation issue

dmomi April 01, 2019 11:50AM

Re: AFNI R packages installation issue

ptaylor April 01, 2019 12:11PM

Re: AFNI R packages installation issue

dmomi April 01, 2019 12:38PM

Re: AFNI R packages installation issue

ptaylor April 01, 2019 12:59PM

Re: AFNI R packages installation issue

dmomi April 01, 2019 01:04PM

Re: AFNI R packages installation issue

ptaylor April 01, 2019 01:12PM

Re: AFNI R packages installation issue

dmomi April 01, 2019 01:21PM

Re: AFNI R packages installation issue

ptaylor April 01, 2019 01:33PM

Re: AFNI R packages installation issue

ptaylor April 23, 2019 05:48PM

Re: AFNI R packages installation issue

dmomi April 29, 2019 03:50AM