AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
Pascale
February 19, 2021 05:22PM
Hello!

I’m wondering if there is a way to align an EPI and a T1 dataset without skull stripping the T1.
We need to align EPI and T1 datasets to use for TMS localization, but for the TMS part, to perform the MRI to head registration, we need the T1 to have its skull. I tried a bunch of options with align_epi_anat.py but could not get as output a T1 aligned with its skull. I was wondering if perhaps I was missing something.
I know the manual nudge function could be used, but I was hoping not to have to align manually.

Thanks a lot in advance!
Pascale
Reply Quote
RSS
Subject Author Posted

Alignment/Skull stripping question

Pascale February 19, 2021 05:22PM

Re: Alignment/Skull stripping question

ptaylor February 19, 2021 06:56PM

Re: Alignment/Skull stripping question

Daniel Glen February 20, 2021 04:46PM