AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
s1110a
June 20, 2019 03:46PM
Thanks a lot for your input.

I think that there might be a hole in my knowledge about view vs. space.

The output below is from @auto_tlrc which was first applied to the structural and then I input the stats file into @auto_tlrc with the output of the previous step (transformed structural) being specified under option -apar.

*+ WARNING: Changing the space of an ORIG view dataset may cause confusion!
*+ WARNING: NIFTI copies will be interpreted as TLRC view (not TLRC space).
*+ WARNING: Consider changing the view of the dataset to TLRC view also
++ 3drefit processed 1 datasets
Changing view of xformed volumes

Based on this terminal output it seems that my view was marked as TLRC but not the space. If I am correct the space determines the coordinates (xyz) and if it is set to an atlas the coordinates you get from AFNI correspond with those from the atlas specified under space. What does the view really mean (I know it is marked in the header)?
Reply Quote
RSS
Subject Author Posted

Warping to Custom Template

s1110a June 19, 2019 04:53PM

Re: Warping to Custom Template

Peter Molfese June 19, 2019 06:21PM

Re: Warping to Custom Template

s1110a June 20, 2019 03:46PM