AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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st
June 21, 2019 12:14PM
Hello experts

I ran @sswarper on a subject [@sswarper $inputT1 $subid -deoblique]. It took about 11-12 hours for a single subject. The second subject is also taking just as long.

The T1 image dims are 174 x 213 x213 (res is 1 x 0.94 x 0.94 mm).
afni -ver is slightly outdated AFNI_17.2.07
But the script running on a server with 96 cpus and I set OMP_NUM_THREADS=48
I have the terminal output (from without -verb) if needed. The output is fine...the images look alright.

Is this a typical amount of time for one image? Can the older afni -ver be the issue?

Thank you for the help

Shankar
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Subject Author Posted

@sswarper speed

st June 21, 2019 12:14PM

Re: @sswarper speed

ptaylor June 21, 2019 01:17PM

Re: @sswarper speed

ptaylor June 21, 2019 01:57PM

Re: @sswarper speed

st June 21, 2019 03:51PM

Re: @sswarper speed

ptaylor June 21, 2019 04:08PM

Re: @sswarper speed

st June 21, 2019 09:58PM

Re: @sswarper speed

ptaylor June 21, 2019 11:17PM

Re: @sswarper speed

st June 22, 2019 02:00PM

Re: @sswarper speed

ptaylor June 22, 2019 02:33PM