AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 03, 2021 01:52PM
Hello,
I am trying to add an additional annotation (DKTatlas). I see there is a new flag, -extra_annot_labels that I think should do what I want.

For reference, I am running:
Precompiled binary linux_openmp_64: Jan 18 2021 (Version AFNI_21.0.04 'Titus')

I used the command:
@SUMA_Make_Spec_FS -NIFTI -extra_annot_labels DKTatlas -sid sub-CSA006

I also tried

@SUMA_Make_Spec_FS -NIFTI -extra_annot_labels aparc.DKTatlas -sid sub-CSA006

As the help says it wants the files to exist with the name
lh.LABEL.annot
rh.LABEL.annot

for the DKTatlas, there is:

In the label directory:
aparc.annot.DKTatlas.ctab
lh.aparc.DKTatlas.annot
rh.aparc.DKTatlas.annot

In the mri directory:
aparc.DKTatlas+aseg.mgz

It seems to register the flag, as it says on line 2 of the output: ++ will track 1 extra annot labels

But then it never gives an error message, or tries to do anything with the DKTatlas.

Any help is much appreciated!
Stephanie McMains
Subject Author Posted

@SUMA_Make_Spec_FS with additional annotations

activatedvoxel March 03, 2021 01:52PM

Re: @SUMA_Make_Spec_FS with additional annotations

ptaylor March 08, 2021 02:15PM

Re: @SUMA_Make_Spec_FS with additional annotations

activatedvoxel March 17, 2021 09:58AM

Re: @SUMA_Make_Spec_FS with additional annotations

ptaylor March 17, 2021 04:11PM

Re: @SUMA_Make_Spec_FS with additional annotations

activatedvoxel March 22, 2021 03:29PM

Re: @SUMA_Make_Spec_FS with additional annotations

activatedvoxel April 06, 2021 03:17PM

Re: @SUMA_Make_Spec_FS with additional annotations

ptaylor April 06, 2021 03:24PM