AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 06, 2019 04:35PM
> what can I do if I did that regression using 3dDentred? Can I get the errts in an isolated step?

3dDetrend is all you did at the individual subject level? If so, you may use the output from 3dDetrend as an approximation.

> Are these parameters the average across all volumes/subbriks?

Yes.

> Should I put the first three in acf option when using 3dClustsim then?

Yes.

> if I get every subject acf parameters, should I put the mean of all these inter-subject acf parameters with the tstat map as
> an input (using 3dClustsim) ?

You can use the average ACF parameters across subjects as input for 3dClustSim with a brain mask that has the same resolution as your group analysis results.

> if I am using correlation map for the group level analysis, Is it possible to use the option -resid in 3dLME to get the residuals
> for each subject's correlation map and then calculate the acf parameters from these residuals (coming from subject correlation
> maps)? or is getting the errts file mandatory?

Either is fine as an approximation for the ACF parameters.

> from which type of data should extract the errts? from subject EPI or subject statistical maps?

Probably preferable to use the residual time series.

Gang
Subject Author Posted

Steps and considerations before using 3dClustsim

Karelo September 05, 2019 06:08AM

Re: Steps and considerations before using 3dClustsim

Karelo September 05, 2019 10:37AM

Re: Steps and considerations before using 3dClustsim

gang September 06, 2019 04:35PM

Re: Steps and considerations before using 3dClustsim

Karelo September 11, 2019 03:32AM