AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 08, 2021 10:06PM
I am exploring the BOLD5000 dataset (Chang et al., 2019; link to webpage; link to paper). I am considering how to model it to get a beta map for each stimulus, which would be the input for further analysis.

The dataset has four participants who each participated in a slow event related design over ~16 sessions of ~10 runs each. Over this time, they viewed ~5000 distinct images. If it were concatenated, the full dataset has on the order of 30,000 time points. While compressed and represented as 16-bit integers, the functional data for one subject is about 20GB as nii.gz--concatenation converts to 32-bit floats while uncompressing.

Of course, since it is slow and event related, I might just extract some volumes for analysis without modeling. But I am interested in thinking in how to approach the modeling problem at this scale. Since the images are all distinct, it seems that modelling all sessions/runs at once would be ideal.
Subject Author Posted

Modeling the BOLD5000 dataset

ChrisCox June 08, 2021 10:06PM

Re: Modeling the BOLD5000 dataset

gang June 09, 2021 05:38PM

Re: Modeling the BOLD5000 dataset

ChrisCox June 09, 2021 09:01PM

Re: Modeling the BOLD5000 dataset

rick reynolds June 10, 2021 11:59AM

Re: Modeling the BOLD5000 dataset

ChrisCox June 10, 2021 03:07PM

Re: Modeling the BOLD5000 dataset

RWCox June 10, 2021 11:17AM

Re: Modeling the BOLD5000 dataset

ChrisCox June 10, 2021 02:56PM