AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 11, 2019 08:08PM
I think I've answered my question, but in case anyone else happens upon this post, here it is.

Looking at the output file from running the 3dDeconvolve, there is the following text to help you a long your way. It appears it spits out the exact 3dREMLfit command you should use for the particular subject. For instance:
+ ========= Things you can do with the matrix file =========
++ (a) Linear regression with ARMA(1,1) modeling of serial correlation:

3dREMLfit -matrix X.xmat_Interference.1D \
 -input "pb04.sub-102.r01.blur+orig.HEAD pb04.sub-102.r02.blur+orig.HEAD pb04.sub-102.r03.blur+orig.HEAD pb04.sub-102.r04.blur+orig.HEAD" \
 -mask mask_anat.sub-102+orig -tout -Rbuck stats_Interference.sub-102_REML -Rvar stats_Interference.sub-102_REMLvar \
 -Rfitts fitts_Interference.sub-102_REML -Rerrts errts_Interference.sub-102_REML -verb
 
++ N.B.: 3dREMLfit command above written to file stats_Interference.REML_cmd
Subject Author Posted

How to run 3dREMLfit on already preprocessed data

jyaros October 07, 2019 06:23PM

Re: How to run 3dREMLfit on already preprocessed data

jyaros October 11, 2019 08:08PM

Re: How to run 3dREMLfit on already preprocessed data

rick reynolds October 12, 2019 12:28PM