AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 16, 2021 04:48PM
Hi Afni experts,

I'm trying to extract the coordinates of the peak activation from a statistical map in native space (generated by afni_proc.py) within a mask (downloaded from NeuroSynth website - and converted into subject's native space).
I used 3dClusterize command with those 2 inputs however it returns: "mask and stat.test don't match in [0] dimension".

However, when I plot the mask and the functional image on the T1, everything look ok. Can someone help me with understanding what is going on.

Thank you very much in advance.
Subject Author Posted

3d clusterize - mask and stat.test don't match in [0] dimensions

Lysianne June 16, 2021 04:48PM

Re: 3d clusterize - mask and stat.test don't match in [0] dimensions

ptaylor June 16, 2021 05:54PM

Re: 3d clusterize - mask and stat.test don't match in [0] dimensions

Lysianne June 16, 2021 06:06PM

Re: 3d clusterize - mask and stat.test don't match in [0] dimensions

ptaylor June 16, 2021 06:39PM

Re: 3d clusterize - mask and stat.test don't match in [0] dimensions

Lysianne June 16, 2021 06:54PM

Re: 3d clusterize - mask and stat.test don't match in [0] dimensions

ptaylor June 16, 2021 08:17PM