AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Nan
October 16, 2019 04:06AM
Hello,

I got a warning message when I used 3dmaskave as below:
=========
Input dataset func_s1_right_decon14+orig[Pos-Neg_GLT#0_Coef] grid mismatch from mask.
Try the following command for grid comparison:
3dinfo -header_line -prefix -same_all_grid ./ROI_put_R+orig.HEAD ./func_s1_right_decon14+orig.HEAD
=========

However, I ran the 3dinfo shown above and found that the grid information of the two data sets are the same, as below:
=========
prefix =dim? =delt? =ornt? =cent? =obl?
ROI_put_R 1 1 1 1 1
func_s1_right_decon14 1 1 1 1 1
=========


I have two EPI scans (s1 and s3) in my experiment, with the same scanning protocol except different oblique angle between the scans.
=========
>> 3dinfo -header_line -prefix -same_all_grid ../s1/s1.nii ../s3/s3.nii
prefix =dim? =delt? =ornt? =cent? =obl?
s1.nii 1 1 1 1 0
s3.nii 1 1 1 1 0
=========
During preprocessing, I removed the oblique information with 3drefit -deoblique, for both the EPI scans as well as the anatomy image. The alignment between the EPI and anatomy images was good. However, the warning message only appeared for the s1 scan when I ran 3dmaskave, and also, the 3dinfo did not show any mismatch between the files of ROI_put_R+orig.HEAD and func_s1_right_decon14+orig.HEAD.
I am confused by the warning message.

Any suggestion or idea on the issue would be appreciated. Thank you very much.

-- Nan
Subject Author Posted

grid mismatch when using 3dmaskave

Nan October 16, 2019 04:06AM

Re: grid mismatch when using 3dmaskave

Daniel Glen October 16, 2019 03:37PM

Re: grid mismatch when using 3dmaskave

Nan October 16, 2019 10:45PM

Re: grid mismatch when using 3dmaskave

rick reynolds October 16, 2019 10:54PM

Re: grid mismatch when using 3dmaskave

Nan October 17, 2019 01:58AM