AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 17, 2019 11:08AM
Thanks in advance for your help with this issue.

I am attempting to run 3dANOVA for comparing a single measure across 3 groups (grp1, grp2, grp3) but I encounter the following error. Any suggestions on how to fix the issue?

**Error: Unrecognized command line option: 1
Here's hoping these excerpts from '3dANOVA -help' enlighten:
'(1) Faces, (2) Houses, and (3) Donuts'
'-dset 1 filename : data set for factor level 1'
'-dset 1 filename data set for factor level 1'

My script is set as up recommended by 3dANOVA -help:

#!/bin/tcsh
3dANOVA -levels 3 \
-dset 1 path_to_file/input_file
-dset 1 ...
-dset 1 ...
-dset 2 path_to_file/input_file
-dset 2 ...
-dset 2 ...
-dset 3 path_to_file/input_file
-dset 3 ...
-dset 3 …
-mask path to file/mask \
-ftr group \
-mean 1 grp1 \
-mean 2 grp2 \
-mean 3 grp3 \
-diff grp1vsgrp2 \
-diff grp2vsgrp3 \
-diff grp1vsgrp3 \
-contr 1 1 -1 grp1grp2vsgrp3 \
-contr -1 1 1 grp1vsgrp2grp3 \
-contr 1 -1 1 grp1grp3vsgrp2 \
-bucket prefix

Jesse DeSimone, Ph.D.
Subject Author Posted

3dANOVA command line error

Jesse DeSimone October 17, 2019 11:08AM

Re: 3dANOVA command line error

Peter Molfese October 17, 2019 11:57AM

Re: 3dANOVA command line error

Jesse DeSimone October 17, 2019 01:02PM

Re: 3dANOVA command line error

rick reynolds October 17, 2019 01:34PM

Re: 3dANOVA command line error

rick reynolds October 17, 2019 02:20PM

Re: 3dANOVA command line error

Jesse DeSimone October 17, 2019 04:17PM