AFNI Message Board

History of AFNI updates  

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November 18, 2019 08:41AM
Hi Paul,
Here is the result

-------------------------------- general ---------------------------------
architecture:         64bit
system:               Linux
release:              4.4.0-17763-Microsoft
version:              #379-Microsoft Wed Mar 06 19:16:00 PST 2019
distribution:         Ubuntu 18.04 bionic
number of CPUs:       24
apparent login shell: bash
shell RC file:        .bashrc (exists)

--------------------- AFNI and related program tests ---------------------
which afni           : /home/cgarin/abin/afni
afni version         : Precompiled binary linux_ubuntu_16_64: Nov  8 2019
                     : AFNI_19.3.12 'Nero'
AFNI_version.txt     : AFNI_19.3.12, linux_ubuntu_16_64, Nov 08 2019
which python         : /usr/bin/python
python version       : 2.7.15+
which R              : /usr/bin/R
R version            : R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
which tcsh           : /usr/bin/tcsh

instances of various programs found in PATH:
    afni    : 1   (/home/cgarin/abin/afni)
    R       : 1   (/usr/bin/R)
    python  : 1   (/usr/bin/python2.7)
    python2 : 1   (/usr/bin/python2.7)
    python3 : 1   (/usr/bin/python3.6)


testing ability to start various programs...
    afni                 : success
    suma                 : success
    3dSkullStrip         : success
    uber_subject.py      : success
    3dAllineate          : success
    3dRSFC               : success
    SurfMesh             : success
    3dClustSim           : success
    3dMVM                : success

checking for R packages...
    rPkgsInstall -pkgs ALL -check : FAILURE

        oo Warning:
           These packages are not installed on the computer: brms!
        These packages are not installed on the computer: metafor!


R RHOME : /usr/lib/R

checking for $HOME files...
    .afnirc                   : found
    .sumarc                   : found
    .afni/help/all_progs.COMP : found

------------------------------ python libs -------------------------------
++ module loaded: PyQt4
   module file : /usr/lib/python2.7/dist-packages/PyQt4/__init__.pyc

** failed to load module matplotlib.pyplot
-- matplotlib.pyplot is not required, but is desirable

-------------------------------- env vars --------------------------------
PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/c/Program Files/WindowsApps/CanonicalGroupLimited.Ubuntu18.04onWindows_1804.2018.817.0_x64__79rhkp1fndgsc:/mnt/c/Windows/System32:/mnt/c/Windows:/mnt/c/Windows/System32/wbem:/mnt/c/Windows/System32/WindowsPowerShell/v1.0:/mnt/c/Windows/System32/OpenSSH:/mnt/c/Program Files/PuTTY:/mnt/c/Users/cgarin/AppData/Local/Microsoft/WindowsApps:/snap/bin:/home/cgarin/abin

PYTHONPATH =
R_LIBS = /home/cgarin/R

LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =

------------------------------ data checks -------------------------------
data dir : found AFNI_data6   under $HOME
           top history: ...2019 [ptaylor]: updated FT_analysis/results.QC_FT.05
data dir : found AFNI_demos   under $HOME
           top history: 22 Oct 2019 [discoraj]: added Cluster Explorer Demo
data dir : found suma_demo    under $HOME
           top history: ...s_New/data/Build_tmp on Mon Mar  4 11:56:45 EST 2013
data dir : found afni_handouts under $HOME
atlas    : found TT_N27+tlrc  under /home/cgarin/abin

------------------------------ OS specific -------------------------------
which apt-get        : /usr/bin/apt-get
apt-get version      : apt 1.6.3 (amd64)

have Ubuntu system: Ubuntu 18.04 bionic
have Ubuntu afni  : Precompiled binary linux_ubuntu_16_64: Nov  8 2019

=========================  summary, please fix:  =========================
*  login shell 'bash', trusting user to translate code examples from 'tcsh'
*  missing R packages (see rPkgsInstall)

again thanks a lot for your help!!

Clement
Subject Author Posted

(possible) solution to install brms on Ubuntu 18.04 on WSL

discoraj November 06, 2019 10:56AM

Re: (possible) solution to install brms on Ubuntu 18.04 on WSL

Doughboys November 15, 2019 06:14PM

Re: (possible) solution to install brms on Ubuntu 18.04 on WSL

ptaylor November 15, 2019 10:29PM

Re: (possible) solution to install brms on Ubuntu 18.04 on WSL

Doughboys November 18, 2019 08:41AM

Re: (possible) solution to install brms on Ubuntu 18.04 on WSL Attachments

gerard.campbell@strath.ac.uk February 26, 2020 03:49AM

Re: (possible) solution to install brms on Ubuntu 18.04 on WSL

ptaylor February 26, 2020 08:08AM

Re: (possible) solution to install brms on Ubuntu 18.04 on WSL

gerard.campbell@strath.ac.uk February 27, 2020 03:11AM

Re: (possible) solution to install brms on Ubuntu 18.04 on WSL

ptaylor February 27, 2020 07:28AM

Re: (possible) solution to install brms on Ubuntu 18.04 on WSL

Pawel December 16, 2020 07:10PM

Re: (possible) solution to install brms on Ubuntu 18.04 on WSL

bgoeckner February 24, 2021 03:20PM

Re: (possible) solution to install brms on Ubuntu 18.04 on WSL

xy497 September 11, 2021 12:53AM

Re: (possible) solution to install brms on Ubuntu 18.04 on WSL

xy497 September 11, 2021 12:54AM

Re: (possible) solution to install brms on Ubuntu 18.04 on WSL

Pawel September 14, 2021 12:25AM

Re: (possible) solution to install brms on Ubuntu 18.04 on WSL

xy497 September 11, 2021 01:26AM

Re: (possible) solution to install brms on Ubuntu 18.04 on WSL

Gang December 18, 2020 08:40AM



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