AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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JW
November 18, 2019 09:13AM
Dear AFNI experts,

Could you please let me know how can I find pre-processed but non-statistically analyzed data from proc.py output?

Below is the script I used.

afni_proc.py \
-anat_has_skull yes \
-blocks despike tshift align tlrc volreg mask scale regress \
-copy_anat mprage/mprage.${subj}.${cond}+orig \
-dsets /${subj}/${subj}.${cond}/${subj}.${cond}+orig \
-tcat_remove_first_trs 3 \
-out_dir results \
-script py_result_${subj}.${cond}.script \
-subj_id ${subj} \
-tlrc_base MNI152_T1_2009c+tlrc \
-tlrc_suffix _MNI152 \
-volreg_align_to third \
-volreg_interp -Fourier \
-volreg_opts_vr -twopass -noclip -dfile volreg.${subj}.${cond}.1d \
-volreg_tlrc_warp \
-volreg_warp_dxyz 3 \
-mask_apply epi \
-regress_stim_times /Volumes/BRAINSMITH_DS/Titus/AES2016_FNT/${subj}/${subj}.${cond}/timing/${subj}.${cond}.*.stim.txt \
-regress_stim_labels F NF \
-regress_basis 'BLOCK(4,1)' \
-regress_censor_motion 0.3 \
-regress_opts_3dD \
-gltsym 'SYM: +F -NF' \
-glt_label 1 F_vs_NF

And, the attached is the output files from this script. I am not sure if I can find the pre-processed but non-statistically analyzed data among these outputs or should run another script. Please let me know.

Best,
Jun
Attachments:
open | download - Untitled.png (178.9 KB)
Subject Author Posted

Pre-processed but non-statistically analyzed data Attachments

JW November 18, 2019 09:13AM

Re: Pre-processed but non-statistically analyzed data

ptaylor November 18, 2019 11:42AM

Re: Pre-processed but non-statistically analyzed data

rick reynolds November 20, 2019 09:04PM