AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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chaj
December 05, 2019 10:00AM
Hello,

I am trying to calculate the resting state functional connectivity(RSFC) map.

3dNetCorr does not support to use eigen value of ROI time series, so I would like to use 3dfim+ which will use 1D time series file that I input (eigen value timeseries of the ROI) and calculate the RSFC map to the whole brain.
But, 3dfim+ description is saying that "This program (3dfim+) is very old, may not be useful, and will not be maintained. Program to calculate the cross-correlation of an ideal reference waveform with the measured FMRI time series for each voxel".

What command do I need to use to get RSFC map based on 1D time series file that I input?


Thanks
Jung
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Subject Author Posted

Functional connectivity map

chaj December 05, 2019 10:00AM

Re: Functional connectivity map

gang December 05, 2019 01:12PM

Re: Functional connectivity map

chaj December 05, 2019 02:21PM

Re: Functional connectivity map

Daniel Glen December 10, 2019 12:50PM