AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
August 03, 2020 07:53PM
Hello!

I'm having trouble trying to get rid of this error:

Error in if (ii < dimx) ii <- ii + 1 else if (jj < dimy) { :
missing value where TRUE/FALSE needed
Execution halted

Any help would be appreciated.

Here is the command I'm running:

3dLMEr \
-prefix ${PREFIX} \
-jobs ${JOBS} \
-mask ${MASK} \
-model 'group+(1|Subj)' \
-gltCode dyslexia 'group : 1*dyslexia' \
-gltCode control 'group : 1*control' \
-gltCode control-dyslexia 'group : 1*control -1*dyslexia' \
-dataTable \
Subj group InputFile \
Luke_Nih_C001 control ${FUNC_DIR}/Luke_Nih_C001/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C002 dyslexia ${FUNC_DIR}/Luke_Nih_C002/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C003 control ${FUNC_DIR}/Luke_Nih_C003/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C004 control ${FUNC_DIR}/Luke_Nih_C004/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C005 control ${FUNC_DIR}/Luke_Nih_C005/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C006 control ${FUNC_DIR}/Luke_Nih_C006/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C007 control ${FUNC_DIR}/Luke_Nih_C007/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C008 control ${FUNC_DIR}/Luke_Nih_C008/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C009 control ${FUNC_DIR}/Luke_Nih_C009/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C010 control ${FUNC_DIR}/Luke_Nih_C010/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C011 control ${FUNC_DIR}/Luke_Nih_C011/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C012 control ${FUNC_DIR}/Luke_Nih_C012/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C013 control ${FUNC_DIR}/Luke_Nih_C013/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C014 control ${FUNC_DIR}/Luke_Nih_C014/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C016 control ${FUNC_DIR}/Luke_Nih_C016/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C017 control ${FUNC_DIR}/Luke_Nih_C017/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C018 control ${FUNC_DIR}/Luke_Nih_C018/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C019 control ${FUNC_DIR}/Luke_Nih_C019/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C020 control ${FUNC_DIR}/Luke_Nih_C020/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C021 control ${FUNC_DIR}/Luke_Nih_C021/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C022 control ${FUNC_DIR}/Luke_Nih_C022/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_C023 control ${FUNC_DIR}/Luke_Nih_C023/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D001 dyslexia ${FUNC_DIR}/Luke_Nih_D001/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D003 dyslexia ${FUNC_DIR}/Luke_Nih_D003/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D006 dyslexia ${FUNC_DIR}/Luke_Nih_D006/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D007 dyslexia ${FUNC_DIR}/Luke_Nih_D007/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D008 dyslexia ${FUNC_DIR}/Luke_Nih_D008/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D009 dyslexia ${FUNC_DIR}/Luke_Nih_D009/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D010 dyslexia ${FUNC_DIR}/Luke_Nih_D010/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D011 dyslexia ${FUNC_DIR}/Luke_Nih_D011/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D012 dyslexia ${FUNC_DIR}/Luke_Nih_D012/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D013 dyslexia ${FUNC_DIR}/Luke_Nih_D013/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D014 dyslexia ${FUNC_DIR}/Luke_Nih_D014/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D015 dyslexia ${FUNC_DIR}/Luke_Nih_D015/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D016 dyslexia ${FUNC_DIR}/Luke_Nih_D016/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D017 dyslexia ${FUNC_DIR}/Luke_Nih_D017/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D018 dyslexia ${FUNC_DIR}/Luke_Nih_D018/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D019 dyslexia ${FUNC_DIR}/Luke_Nih_D019/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D020 dyslexia ${FUNC_DIR}/Luke_Nih_D020/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D021 dyslexia ${FUNC_DIR}/Luke_Nih_D021/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D022 dyslexia ${FUNC_DIR}/Luke_Nih_D022/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D023 dyslexia ${FUNC_DIR}/Luke_Nih_D023/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D025 dyslexia ${FUNC_DIR}/Luke_Nih_D025/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D026 dyslexia ${FUNC_DIR}/Luke_Nih_D026/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]' \
Luke_Nih_D027 dyslexia ${FUNC_DIR}/Luke_Nih_D027/predictability/predictability_blur5_ANTS_resampled+tlrc'[3]'

Thanks!
-Ben
Subject Author Posted

New program 3dLMEr for linear mixed-effects modeling

gang December 30, 2019 10:58AM

Re: New program 3dLMEr for linear mixed-effects modeling

Yue January 08, 2020 05:22PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang January 09, 2020 12:01PM

Re: New program 3dLMEr for linear mixed-effects modeling

Yue January 14, 2020 11:15AM

Re: New program 3dLMEr for linear mixed-effects modeling

Andrew Davis April 24, 2020 01:11PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang April 24, 2020 02:39PM

Re: New program 3dLMEr for linear mixed-effects modeling

Andrew Davis April 25, 2020 11:46AM

Re: New program 3dLMEr for linear mixed-effects modeling

Andrew Davis April 30, 2020 04:02PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang April 30, 2020 05:53PM

Re: New program 3dLMEr for linear mixed-effects modeling

Andrew Davis April 30, 2020 09:07PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang May 01, 2020 02:42PM

Re: New program 3dLMEr for linear mixed-effects modeling

Andrew Davis May 02, 2020 12:12PM

Re: New program 3dLMEr for linear mixed-effects modeling

ben88 August 03, 2020 07:53PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang August 04, 2020 07:53AM

Re: New program 3dLMEr for linear mixed-effects modeling

ben88 August 04, 2020 08:14AM

Re: New program 3dLMEr for linear mixed-effects modeling

gang August 04, 2020 08:59AM

Re: New program 3dLMEr for linear mixed-effects modeling

ben88 August 12, 2020 04:33PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang August 13, 2020 02:36PM

Re: New program 3dLMEr for linear mixed-effects modeling

aojha17 September 14, 2020 10:56AM

Re: New program 3dLMEr for linear mixed-effects modeling

gang September 14, 2020 02:13PM

Re: New program 3dLMEr for linear mixed-effects modeling

aojha17 September 18, 2020 07:32PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang September 21, 2020 08:31PM

Re: New program 3dLMEr for linear mixed-effects modeling

aojha17 September 22, 2020 03:41PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang September 22, 2020 04:00PM

Re: New program 3dLMEr for linear mixed-effects modeling

aojha17 September 22, 2020 09:01PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang September 23, 2020 10:09AM

Re: New program 3dLMEr for linear mixed-effects modeling

aojha17 September 23, 2020 11:21AM

Re: New program 3dLMEr for linear mixed-effects modeling

henrybrice October 20, 2020 09:06AM

Re: New program 3dLMEr for linear mixed-effects modeling

gang October 20, 2020 12:31PM

Re: New program 3dLMEr for linear mixed-effects modeling

henrybrice October 20, 2020 03:22PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang October 20, 2020 09:05PM

Re: New program 3dLMEr for linear mixed-effects modeling

henrybrice October 21, 2020 05:43AM



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