AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
October 20, 2020 03:22PM
-------------------------------- general ---------------------------------
architecture:         64bit 
system:               Darwin
release:              19.6.0
version:              Darwin Kernel Version 19.6.0: Thu Jun 18 20:49:00 PDT 2020; root:xnu-6153.141.1~1/RELEASE_X86_64
distribution:         unknown Darwin
number of CPUs:       4
apparent login shell: bash
shell RC file:        .bashrc (exists)

--------------------- AFNI and related program tests ---------------------
which afni           : /Users/LanguageLab/abin/afni
afni version         : Precompiled binary macos_10.12_local: Sep  1 2020 
                     : AFNI_20.2.16 'Aulus Vitellius'
AFNI_version.txt     : AFNI_20.2.16, macos_10.12_local, Sep 01 2020
which python         : /usr/local/bin/python
python version       : 2.7.15
which R              : /usr/local/bin/R
R version            : R version 3.6.0 (2019-04-26) -- "Planting of a Tree"
which tcsh           : /bin/tcsh

instances of various programs found in PATH:
    afni    : 1   (/Users/LanguageLab/abin/afni)
    R       : 1   (/Library/Frameworks/R.framework/Versions/3.6/Resources/bin/R)
    python  : 2 
      /usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/bin/python2.7
      /System/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
    python2 : 2 
      /usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/bin/python2.7
      /System/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
    python3 : 2 
      /usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/bin/python3.7
      /usr/bin/python3


testing ability to start various programs...
    afni                 : success
    suma                 : success
    3dSkullStrip         : success
    uber_subject.py      : success
    3dAllineate          : success
    3dRSFC               : success
    SurfMesh             : success
    3dClustSim           : success
    3dMVM                : success

checking for R packages...
    rPkgsInstall -pkgs ALL -check : success

R RHOME : /Library/Frameworks/R.framework/Resources

checking for $HOME files...
    .afnirc                   : found
    .sumarc                   : found
    .afni/help/all_progs.COMP : found

------------------------------ python libs -------------------------------
++ module loaded: PyQt4
   module file : /usr/local/lib/python2.7/site-packages/PyQt4/__init__.pyc

** failed to load module matplotlib.pyplot
-- matplotlib.pyplot is not required, but is desirable

-- python binaries under /usr/local/bin:
    /usr/local/bin/python (sym link to /usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/bin/python2.7)
    /usr/local/bin/python3 (sym link to /usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/bin/python3.7)
    /usr/local/bin/python2 (sym link to /usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/bin/python2.7)
    /usr/local/bin/python3.7 (sym link to /usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/bin/python3.7)
    /usr/local/bin/python2.7 (sym link to /usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/bin/python2.7)

-------------------------------- env vars --------------------------------
PATH = /usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Users/LanguageLab/abin:/Users/LanguageLab/abin

PYTHONPATH = 
R_LIBS = 
LD_LIBRARY_PATH = 
DYLD_LIBRARY_PATH = 
DYLD_FALLBACK_LIBRARY_PATH = 

------------------------------ data checks -------------------------------
data dir : found AFNI_data6   under $HOME
           top history: 20 Feb 2020 [rickr]: updated FT_analysis examples
data dir : found AFNI_demos   under $HOME
           top history: 22 Oct 2019 [discoraj]: added Cluster Explorer Demo
data dir : found suma_demo    under $HOME
           top history: ...s_New/data/Build_tmp on Mon Mar  4 11:56:45 EST 2013
data dir : found afni_handouts under $HOME
atlas    : found TT_N27+tlrc  under /Users/LanguageLab/abin

------------------------------ OS specific -------------------------------
XQuartz version      : 2.7.11

which brew           : /usr/local/bin/brew
brew version         : Homebrew 1.6.9-111-g15ac935

++ found 1 dylib files under '/opt/X11/lib/flat_namespace'
   -- found 'libXt' dylib files:
      /opt/X11/lib/flat_namespace/libXt.6.dylib
** env var DYLD_LIBRARY_PATH is not set to contain /opt/X11/lib/flat_namespace
   (so afni and suma may fail)

=========================  summary, please fix:  =========================
*  just be aware: login shell 'bash', but our code examples use 'tcsh'
*  OS X version might be old
*  consider setting DYLD_LIBRARY_PATH to /opt/X11/lib/flat_namespace
Subject Author Posted

New program 3dLMEr for linear mixed-effects modeling

gang December 30, 2019 10:58AM

Re: New program 3dLMEr for linear mixed-effects modeling

Yue January 08, 2020 05:22PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang January 09, 2020 12:01PM

Re: New program 3dLMEr for linear mixed-effects modeling

Yue January 14, 2020 11:15AM

Re: New program 3dLMEr for linear mixed-effects modeling

Andrew Davis April 24, 2020 01:11PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang April 24, 2020 02:39PM

Re: New program 3dLMEr for linear mixed-effects modeling

Andrew Davis April 25, 2020 11:46AM

Re: New program 3dLMEr for linear mixed-effects modeling

Andrew Davis April 30, 2020 04:02PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang April 30, 2020 05:53PM

Re: New program 3dLMEr for linear mixed-effects modeling

Andrew Davis April 30, 2020 09:07PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang May 01, 2020 02:42PM

Re: New program 3dLMEr for linear mixed-effects modeling

Andrew Davis May 02, 2020 12:12PM

Re: New program 3dLMEr for linear mixed-effects modeling

ben88 August 03, 2020 07:53PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang August 04, 2020 07:53AM

Re: New program 3dLMEr for linear mixed-effects modeling

ben88 August 04, 2020 08:14AM

Re: New program 3dLMEr for linear mixed-effects modeling

gang August 04, 2020 08:59AM

Re: New program 3dLMEr for linear mixed-effects modeling

ben88 August 12, 2020 04:33PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang August 13, 2020 02:36PM

Re: New program 3dLMEr for linear mixed-effects modeling

aojha17 September 14, 2020 10:56AM

Re: New program 3dLMEr for linear mixed-effects modeling

gang September 14, 2020 02:13PM

Re: New program 3dLMEr for linear mixed-effects modeling

aojha17 September 18, 2020 07:32PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang September 21, 2020 08:31PM

Re: New program 3dLMEr for linear mixed-effects modeling

aojha17 September 22, 2020 03:41PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang September 22, 2020 04:00PM

Re: New program 3dLMEr for linear mixed-effects modeling

aojha17 September 22, 2020 09:01PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang September 23, 2020 10:09AM

Re: New program 3dLMEr for linear mixed-effects modeling

aojha17 September 23, 2020 11:21AM

Re: New program 3dLMEr for linear mixed-effects modeling

henrybrice October 20, 2020 09:06AM

Re: New program 3dLMEr for linear mixed-effects modeling

gang October 20, 2020 12:31PM

Re: New program 3dLMEr for linear mixed-effects modeling

henrybrice October 20, 2020 03:22PM

Re: New program 3dLMEr for linear mixed-effects modeling

gang October 20, 2020 09:05PM

Re: New program 3dLMEr for linear mixed-effects modeling

henrybrice October 21, 2020 05:43AM



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