AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
January 07, 2020 05:48PM
Hi Daniel,
Thank you so much for this advice! I tried @animal_warper and it work so much better than my own code!
I also tried to apply the parameters from @animal_warper to afni_proc.py and tlrc_NL_warped_dsets.
The warp2std_nsu.nii.gz is well coregistrated with the template and well skullstriped.
However warp2std_nsu.nii.gz is transformed by 3dcopy in warp2std_nsu+orig.HEAD.
afni_proc.py required warp2std_nsu+tlrc.HEAD. The problem is that it block totally afni_proc.py
Is there an option for afni_proc to call warp2std_nsu+orig.HEAD instate of warp2std_nsu+tlrc.HEAD? or did I have do something wrong before?
I tried to transform warp2std_nsu+orig.HEAD in warp2std_nsu+tlrc.HEAD with 3dcopy before launching afni_proc. It went to the end but with an EPI image not co-registrated at all to the template.
I think that I don't really understand the impact of +tlrc and +orig
I would really appreciate some help to solve that.
Thank you very much!
Clément
Subject Author Posted

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Doughboys January 03, 2020 05:38PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Daniel Glen January 03, 2020 05:58PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Doughboys January 07, 2020 05:48PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

ptaylor January 08, 2020 09:46AM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Doughboys January 08, 2020 11:21AM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

ptaylor January 08, 2020 12:09PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Doughboys January 08, 2020 12:35PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

ptaylor January 08, 2020 01:03PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Doughboys January 08, 2020 12:37PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Doughboys January 08, 2020 11:47AM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

ptaylor January 08, 2020 12:10PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Doughboys January 08, 2020 12:38PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Daniel Glen January 08, 2020 06:30PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Doughboys January 09, 2020 09:37AM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

ptaylor January 09, 2020 09:54AM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Doughboys January 09, 2020 11:22AM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

ptaylor January 09, 2020 12:00PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Doughboys January 09, 2020 12:06PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

ptaylor January 09, 2020 12:27PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

ptaylor January 15, 2020 06:21PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Doughboys January 21, 2020 05:49PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

ptaylor January 21, 2020 10:56PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Doughboys January 22, 2020 10:14AM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Doughboys January 22, 2020 06:03PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Doughboys January 22, 2020 06:33PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

ptaylor January 22, 2020 06:46PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Doughboys February 13, 2020 01:15PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Doughboys May 21, 2020 09:27PM

Re: can't malloc -1437173116 bytes in 3dNwarpApply

Daniel Glen May 25, 2020 11:35PM