AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 22, 2020 10:09AM
Hi, Neuro-

The std.60* has a resolution typical of EPI data (~3mm edges) and the std.141* has resolution typical of anatomical data (~1mm edges). Again, these are quite approximate and not constant. So, you could repeat the above steps wtih std.141* surfs instead of std.60 ones---note that you can't mix the resolutions of the surfaces in different steps here!

... However, regarding the distance scale that you would like to resolve: umm, did you acquire your data at a super-high resolution? Most anatomical vols put into FS are acquired with a voxel size of about 1 mm isotropic voxels; maaaaybe some folks get 0.75 mm isotropic or slightly higher. And voxel size determines the minimal possible scale of distances you could measure, under *ideal* circumstances---note that all MRI has noise, and all algorithms are imperfect, sooo, I don't see how distances that are an order of magnitude (about 10 times) smaller than acquired voxel size could be resolved.

For the grey-white boundary, you might want the WM surface (std.*.white.gii) or the smoothed version of that (std.*.smoothwm.gii) instead of std.*.pial.gii; the numbers for either of those WM surfs will be quite similar.

--pt
Subject Author Posted

Distance between 2 coordinates via brain cortex

Neuro January 10, 2020 02:34AM

Re: Distance between 2 coordinates via brain cortex

ptaylor January 10, 2020 08:43AM

Re: Distance between 2 coordinates via brain cortex

Neuro January 23, 2020 06:09AM

Re: Distance between 2 coordinates via brain cortex

ptaylor January 23, 2020 09:11AM

Re: Distance between 2 coordinates via brain cortex

Neuro January 24, 2020 10:44AM

Re: Distance between 2 coordinates via brain cortex

ptaylor January 24, 2020 04:43PM

Re: Distance between 2 coordinates via brain cortex

Neuro January 25, 2020 04:33AM

Re: Distance between 2 coordinates via brain cortex

ptaylor January 25, 2020 01:32PM

Re: Distance between 2 coordinates via brain cortex

Neuro February 15, 2020 04:09AM

Re: Distance between 2 coordinates via brain cortex

ptaylor February 18, 2020 05:53AM

Re: Distance between 2 coordinates via brain cortex

Neuro March 07, 2020 05:10AM

Re: Distance between 2 coordinates via brain cortex

ptaylor March 08, 2020 04:30PM

Re: Distance between 2 coordinates via brain cortex

Neuro March 20, 2020 12:05PM

Re: Distance between 2 coordinates via brain cortex Attachments

ptaylor March 20, 2020 12:35PM

Re: Distance between 2 coordinates via brain cortex

Neuro March 20, 2020 09:09PM

Re: Distance between 2 coordinates via brain cortex

ptaylor March 21, 2020 08:26AM

Re: Distance between 2 coordinates via brain cortex

Neuro March 21, 2020 09:53PM

Re: Distance between 2 coordinates via brain cortex

ptaylor March 22, 2020 10:09AM

Re: Distance between 2 coordinates via brain cortex

Neuro March 30, 2020 11:45AM

Re: Distance between 2 coordinates via brain cortex

ptaylor March 30, 2020 11:57AM

Re: Distance between 2 coordinates via brain cortex

Neuro April 08, 2020 08:42PM