AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 19, 2020 11:21AM
I looked into the T1-image quality thing too.

I personally think (look at cerebellum) that the T1_al_junk (left) looks better than the anat_final.test image (right). I want to remember those warped T1s (anat_final and anat_final_w_skull) looking more clear. We do use -volreg_align_e2a \.

Doesn't it look kind of low-res? Input T1 is > 1mm reslution isotropic and and anat_final.test is 2x2x2 mm. In our other analysis pipelines (very similar scripts) anat_final usually is of 1x1x1 resolution. Perhaps this is unrelated but better to mention it. Attching an older anat_final too, the original T1 there had 1x1x1 resolution and anat-final had 1x1x1 as well.
Attachments:
open | download - T1_al_junk.png (76.9 KB)
open | download - anat_final_good.png (106 KB)
Subject Author Posted

afni_proc.py: ERROR: mri_read_double_ascii: couldn't open file

Robin February 18, 2020 08:19AM

Re: afni_proc.py: ERROR: mri_read_double_ascii: couldn't open file

rick reynolds February 18, 2020 03:11PM

Re: afni_proc.py: ERROR: mri_read_double_ascii: couldn't open file

Robin February 19, 2020 01:49AM

Re: afni_proc.py: ERROR: mri_read_double_ascii: couldn't open file

Robin February 19, 2020 03:38AM

Re: afni_proc.py: ERROR: mri_read_double_ascii: couldn't open file

rick reynolds February 19, 2020 09:52AM

Re: afni_proc.py: ERROR: mri_read_double_ascii: couldn't open file

rick reynolds February 19, 2020 10:12AM

Re: afni_proc.py: ERROR: mri_read_double_ascii: couldn't open file

Robin February 19, 2020 11:06AM

Re: afni_proc.py: ERROR: mri_read_double_ascii: couldn't open file Attachments

Robin February 19, 2020 11:21AM

Re: afni_proc.py: ERROR: mri_read_double_ascii: couldn't open file

rick reynolds February 19, 2020 11:44AM

Re: afni_proc.py: ERROR: mri_read_double_ascii: couldn't open file

Robin February 19, 2020 12:06PM

Re: afni_proc.py: ERROR: mri_read_double_ascii: couldn't open file

rick reynolds February 19, 2020 12:59PM

Re: afni_proc.py: ERROR: mri_read_double_ascii: couldn't open file

Robin February 19, 2020 01:01PM

Re: afni_proc.py: ERROR: mri_read_double_ascii: couldn't open file

rick reynolds February 19, 2020 01:10PM