AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 20, 2020 03:35PM
That looks good. As Peter points out, the other commands you mentioned do not do any alignment at all. 3dresample just puts a dataset into another grid. 3drefit only changes the header of the dataset. To move data from one space to another, you have to use an alignment program as you did with auto_warp.py which calls @auto_tlrc and 3dQwarp to do the actual alignment. It also takes care of the resampling and setting the header attributes.
Subject Author Posted

Align ROI to FA map Attachments

Omar Maximo February 19, 2020 12:30PM

Re: Align ROI to FA map

Peter Molfese February 19, 2020 01:32PM

Re: Align ROI to FA map

Omar Maximo February 19, 2020 02:12PM

Re: Align ROI to FA map

Peter Molfese February 20, 2020 01:30PM

Re: Align ROI to FA map Attachments

Omar Maximo February 20, 2020 02:08PM

Re: Align ROI to FA map

Daniel Glen February 20, 2020 03:35PM