AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 19, 2020 05:01PM
Hi-

Hmm, I am not sure. I just tried running this, which is a similar command to what you are running (just different file names), using the data in the AFNI Bootcamp directory AFNI_data6/FT_analysis/FT/SUMA, and it ran fine:
SurfSmooth \
  -spec std.141.FT_lh.spec \
  -surf_A std.141.lh.smoothwm.gii \
  -met HEAT_07 \
  -input std.141.lh.sulc.niml.dset \
  -target_fwhm 6 \
  -Niter -1 \
  -output TEST.niml.dset

What is your "$SUMA_path/mesh140.${subj}_"$h".spec" dset, and how was it generated (I don't think it was created by @SUMA_Make_Spec_FS)? I am not familiar with what that is; I assume that $h is the hemisphere ("lh" or "rh").

--pt



Edited 1 time(s). Last edit at 02/21/2020 06:09AM by ptaylor.
Subject Author Posted

Surfsmooth error

franciscoara February 19, 2020 04:31PM

Re: Surfsmooth error

ptaylor February 19, 2020 05:01PM

Re: Surfsmooth error

franciscoara February 20, 2020 12:11PM

Re: Surfsmooth error

ptaylor February 20, 2020 01:20PM

Re: Surfsmooth error

franciscoara February 20, 2020 06:54PM

Re: Surfsmooth error

ptaylor February 21, 2020 06:09AM

Re: Surfsmooth error

franciscoara February 24, 2020 02:02PM

Re: Surfsmooth error

ptaylor February 24, 2020 03:47PM

Re: Surfsmooth error Attachments

franciscoara February 27, 2020 06:00PM

Re: Surfsmooth error

franciscoara March 04, 2020 03:06PM