AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Doughboys
February 20, 2020 04:50PM
Hi AFNI expert,

I have 1 anatomical image and 1 functional image that has been acquired with two different FOV orientations.
When I use different viewer (AFNI, MRIcron) the images superposed perfectly because (I don't know where but the orientation of the FOV is saved somewhere)

I have to do some manipulation on the images (obliquity, change the centre etc...) and this orientation is lost.
I am looking for the command that will send the orientation of the functional image into the anatomical space.
I thought that the command was:

3dresample -prefix func_resemple -master anat -input func

but apparently it doesn't match...

thank you for your help!!
Clément
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Subject Author Posted

2 images in the same space

Doughboys February 20, 2020 04:50PM

Re: 2 images in the same space

ptaylor February 20, 2020 05:16PM

Re: 2 images in the same space

Doughboys February 20, 2020 05:35PM

Re: 2 images in the same space

ptaylor February 20, 2020 05:50PM

Re: 2 images in the same space

Doughboys February 20, 2020 06:05PM

Re: 2 images in the same space

ptaylor February 20, 2020 06:25PM

Re: 2 images in the same space

Doughboys February 20, 2020 07:10PM

Re: 2 images in the same space

ptaylor February 21, 2020 06:24AM

Re: 2 images in the same space

Doughboys February 21, 2020 10:38AM

Re: 2 images in the same space

Doughboys February 26, 2020 10:01AM