AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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rick reynolds
February 25, 2020 02:41PM
Hello,

Would you try it again with the "-echo" option included, and save the text output, as in:

using tcsh syntax: 
@SUMA_AlignToExperiment -echo -align_centers -exp_anat O659anatavg.nii \
     -surf_anat fs_SurfVol.nii -prefix fs_SurfVol_Alnd_Exp.nii |& tee out.align.txt

or using bash syntax: 
@SUMA_AlignToExperiment -echo -align_centers -exp_anat O659anatavg.nii \
     -surf_anat fs_SurfVol.nii -prefix fs_SurfVol_Alnd_Exp.nii 2>&1 | tee out.align.txt

and then please email out.align.txt to either Daniel or I (click my name for the address)?
That might help us see what is happening.

Thanks,

- rick



Edited 1 time(s). Last edit at 02/25/2020 02:42PM by rick reynolds.
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Subject Author Posted

@SUMA_AlignToExperiment - Failed to create shift matrix

deniseoswalt February 24, 2020 04:04PM

Re: @SUMA_AlignToExperiment - Failed to create shift matrix

Daniel Glen February 24, 2020 11:29PM

Re: @SUMA_AlignToExperiment - Failed to create shift matrix

deniseoswalt February 25, 2020 02:05PM

Re: @SUMA_AlignToExperiment - Failed to create shift matrix

rick reynolds February 25, 2020 02:41PM