AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 04, 2021 01:04PM
Hello Gang,
Sorry to come back AGAIN with a new question.
When thinking about it (it happens sometimes =)) I realize that maybe I should add a session effect to my model.
Since all the animals were scanned on the same day it may affect the result.
However, the session is strongly linked to "age" and I don't want to annihilate my findings by adding "session".
What are your thoughts?
In any case, out of interest could you please confirm the way to add this effect?

something like??? :

3dLME -prefix 3dLME_glt.nii.gz -jobs 20 -mask brainmask_nolr_func.nii.gz \
-model "Sexe*age*session" -qVars "age" -ranEff "~1+age" -num_glt 5 \
-gltLabel 1 "05MF" -gltCode 1 "Sexe : 0.5*M +0.5*F age :" \
-gltLabel 2 "1MF" -gltCode 2 "Sexe : 1*M -1*F age :" \
-gltLabel 3 "1MF" -gltCode 3 "Sexe : 1*M age :" \
-gltLabel 4 "1F" -gltCode 4 "Sexe : 1*F age :" \
-gltLabel 5 "1F" -gltCode 5 "Sexe : 0.5*M +0.5*F age : session :" \
-dataTable @disign_matrix.txt -resid resid.nii.gz

-gltLabel 5 would give me the full interaction?

Now (to see if I understood) suppose that i want to add another quantitative variable (e.g. weight) that on which I also want to see the effect I could do something like:

3dLME -prefix 3dLME_glt.nii.gz -jobs 20 -mask brainmask_nolr_func.nii.gz \
-model "Sexe*age*session" -qVars "age, weight" -ranEff "~1+age+weight" -num_glt 6 \
-gltLabel 1 "05MF" -gltCode 1 "Sexe : 0.5*M +0.5*F age :" \
-gltLabel 2 "1MF" -gltCode 2 "Sexe : 1*M -1*F age :" \
-gltLabel 3 "1MF" -gltCode 3 "Sexe : 1*M age :" \
-gltLabel 4 "1F" -gltCode 4 "Sexe : 1*F age :" \
-gltLabel 5 "1F" -gltCode 5 "Sexe : 0.5*M +0.5*F age : session :" \.
-gltLabel 6 "1F" -gltCode 5 "Sexe : 0.5*M +0.5*F age : session : weight :" \
-dataTable @disign_matrix.txt -resid resid.nii.gz

-gltLabel 6 would give me the full interaction?

is it correct?
Thank you!!
Subject Author Posted

statistics on a longitudinal fMRI resting-state dataset

Doughboys February 28, 2020 05:12PM

Re: statistics on a longitudinal fMRI resting-state dataset

gang February 29, 2020 11:01PM

Re: statistics on a longitudinal fMRI resting-state dataset

Doughboys March 01, 2020 07:16PM

Re: statistics on a longitudinal fMRI resting-state dataset

gang March 02, 2020 08:03AM

Re: statistics on a longitudinal fMRI resting-state dataset

Doughboys March 02, 2020 12:02PM

Re: statistics on a longitudinal fMRI resting-state dataset

gang March 02, 2020 02:53PM

Re: statistics on a longitudinal fMRI resting-state dataset

Doughboys March 02, 2020 07:01PM

Re: statistics on a longitudinal fMRI resting-state dataset

gang March 03, 2020 09:40AM

Re: statistics on a longitudinal fMRI resting-state dataset

Doughboys February 09, 2021 09:48AM

Re: statistics on a longitudinal fMRI resting-state dataset

gang February 09, 2021 09:01PM

Re: statistics on a longitudinal fMRI resting-state dataset

Doughboys February 10, 2021 08:55AM

Re: statistics on a longitudinal fMRI resting-state dataset

Doughboys February 10, 2021 09:33AM

Re: statistics on a longitudinal fMRI resting-state dataset

Doughboys November 04, 2021 01:04PM

Re: statistics on a longitudinal fMRI resting-state dataset

gang November 05, 2021 10:36AM