AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 26, 2020 09:33AM
Hi, Colm-

Thanks for that suggestion/advice. I would be curious to look at your dataset-- would you be able to upload it? I'd be curious to see if there might be a way to automate this process more.

Note that 3dZeropad can take negative values (-> negative zeropadding is removing slices), so that might be a useful way to go: counting the number of slices to delete from the left boundary, from the right boundary, from the anterior boundary, etc.

But again, I would hope we could try to help navigate some of this programmatically (which may just be naive optimism on my part, of course!).

--pt
Subject Author Posted

Problem with deskulling 7T scan

mikek March 24, 2020 02:48PM

Re: Problem with deskulling 7T scan

ptaylor March 24, 2020 03:19PM

Re: Problem with deskulling 7T scan

mikek March 25, 2020 02:35PM

Re: Problem with deskulling 7T scan

ptaylor March 25, 2020 02:53PM

Re: Problem with deskulling 7T scan

mikek March 25, 2020 03:16PM

Re: Problem with deskulling 7T scan

ptaylor March 25, 2020 04:36PM

Re: Problem with deskulling 7T scan

mikek March 26, 2020 09:00AM

Re: Problem with deskulling 7T scan

ptaylor March 26, 2020 09:35AM

Re: Problem with deskulling 7T scan

mikek March 26, 2020 09:49AM

Re: Problem with deskulling 7T scan

ptaylor March 26, 2020 10:25AM

Re: Problem with deskulling 7T scan

mikek March 26, 2020 01:28PM

Re: Problem with deskulling 7T scan Attachments

mikek March 26, 2020 05:35PM

Re: Problem with deskulling 7T scan

mikek March 27, 2020 08:21AM

Re: Problem with deskulling 7T scan

ptaylor March 27, 2020 09:21AM

Re: Problem with deskulling 7T scan

Colm Connolly March 26, 2020 09:11AM

Re: Problem with deskulling 7T scan

ptaylor March 26, 2020 09:33AM

Re: Problem with deskulling 7T scan

Colm Connolly March 26, 2020 04:53PM

Re: Problem with deskulling 7T scan

ptaylor March 26, 2020 05:17PM