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April 22, 2020 09:09PM
In your 3dAllineate command, add -final NN. That should help.

 -final iii  = Defines the interpolation mode used to create the
               output dataset.  [Default == 'cubic']
            ** N.B.: If you are applying a transformation to an
                       integer-valued dataset (such as an atlas),
                       then you should use '-final NN' to avoid
                       interpolation of the integer labels.
Subject Author Posted

Warping a binary mask to standard space

jyaros April 22, 2020 07:15PM

Re: Warping a binary mask to standard space

Peter Molfese April 22, 2020 09:09PM

Re: Warping a binary mask to standard space

jyaros April 23, 2020 10:41PM



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