AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Doughboys
May 06, 2020 02:08PM
Hello AFNI experts

I would like to use a macaque atlas that is in the F99 template space.
In order to do that, I would like to send the atlas in the nmt template.

To do so I used: 
@animal_warper -input nmt_1.2/NMT_SS.nii.gz -base Human_macaque_equivalent/F99_with_skull.nii.gz -atlas RM_inF99.nii.gz -outdir Human_macaque_equivalent/InD99 -skullstrip Human_macaque_equivalent/F99_with_skull_mask.nii.gz

The problem is that the registration fails especially in the prefrontal area.
I can see that two templates overlap but the F99 remains larger in the prefrontal area.

I tried with -cost lpc and nmi and with -supersize with no improvement.

Thank you in advance for your help!
By the way thank you also for the update of @animal_warper!!!!

Clément
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Subject Author Posted

@animal_warper nmt macaque to F99

Doughboys May 06, 2020 02:08PM

Re: @animal_warper nmt macaque to F99

ptaylor May 06, 2020 02:31PM

Re: @animal_warper nmt macaque to F99

Doughboys May 06, 2020 03:03PM

Re: @animal_warper nmt macaque to F99 Attachments

ptaylor May 07, 2020 04:20PM