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May 06, 2020 02:08PM
Hello AFNI experts

I would like to use a macaque atlas that is in the F99 template space.
In order to do that, I would like to send the atlas in the nmt template.

To do so I used:
@animal_warper -input nmt_1.2/NMT_SS.nii.gz -base Human_macaque_equivalent/F99_with_skull.nii.gz -atlas RM_inF99.nii.gz -outdir Human_macaque_equivalent/InD99 -skullstrip Human_macaque_equivalent/F99_with_skull_mask.nii.gz

The problem is that the registration fails especially in the prefrontal area.
I can see that two templates overlap but the F99 remains larger in the prefrontal area.

I tried with -cost lpc and nmi and with -supersize with no improvement.

Thank you in advance for your help!
By the way thank you also for the update of @animal_warper!!!!

Clément
Subject Author Posted

@animal_warper nmt macaque to F99

Doughboys May 06, 2020 02:08PM

Re: @animal_warper nmt macaque to F99

ptaylor May 06, 2020 02:31PM

Re: @animal_warper nmt macaque to F99

Doughboys May 06, 2020 03:03PM

Re: @animal_warper nmt macaque to F99 Attachments

ptaylor May 07, 2020 04:20PM



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