AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 21, 2020 08:02PM
Given an ROI on the surface made in SUMA, you first convert that to dataset that covers the whole surface with ROI2dataset (changing the pad_to_node option for the number of nodes in your surface minus 1). Choose the surface to apply the region. Then you can use the info_area option as a summary over all the surface or sum them over the nodes yourself with 3dBrickStat.

ROI2dataset -prefix testroi1 -pad_to_node 198811 -input testroi1.niml.roi
SurfMeasures -info_area -func n_area_A -spec std.141.FT_lh.spec -surf_A pial -cmask '-a testroi1.niml.dset -expr step(a)' -out testsm.niml.dset
++ Notice SUMA_LoadSpec_eng (SUMA_Load_Surface_Object.c:4297 @19:44:34):
Label dsets should only be attached to
surfaces with LocalDomainParent = SAME).
LabelDset ././std.141.lh.aparc.a2009s.annot.niml.dset is ignored.
----------------------------------------------------------
-- total area 0 = 815.8
-- from cmask, nodes skipped = 196773

3dBrickStat -sum testsm.niml.dset'[1]'
815.805
Subject Author Posted

Surface area of SUMA ROI

amehta May 21, 2020 04:31PM

Re: Surface area of SUMA ROI

Daniel Glen May 21, 2020 08:02PM

Re: Surface area of SUMA ROI Attachments

amehta May 26, 2020 11:33AM

Re: Surface area of SUMA ROI

amehta June 01, 2020 11:47AM

Re: Surface area of SUMA ROI

Daniel Glen June 01, 2020 09:23PM

Re: Surface area of SUMA ROI

amehta June 02, 2020 02:18PM

Re: Surface area of SUMA ROI

Daniel Glen June 02, 2020 03:50PM

Re: Surface area of SUMA ROI

amehta June 02, 2020 06:12PM

Re: Surface area of SUMA ROI

Daniel Glen June 02, 2020 06:26PM

Re: Surface area of SUMA ROI

amehta June 02, 2020 06:57PM