AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 02, 2020 01:19PM
OK, thank you. I tried setting OMP_NUM_THREADS to 4 with
set OMP_NUM_THREADS = 4
in my script. When I run @SSwarper, it still gives the output of
Default OMP_NUM_THREADS is 20

Do I need to set it differently?

After several passes of this script, I am finally down to one last subject with this issue, but this issue keeps happening to them regardless.
++ 3dQwarp: replacing source dataset with 3dAllineate result Sub_019_01_anat_warped/junk.SSwarper.EBdyxzaeQEc_TAL5_Allin.nii
++ Dataset zero-pad: xbot=15 xtop=14  ybot=13 ytop=22  zbot=15 ztop=9 voxels
++ +++++++++++ Begin warp optimization:  base=/Volumes/Research_Data/Rhoades_Projects/RestingStatefMRI/Masks_Templates/MNI152_2009_template_SSW.nii.gz  source=/Volumes/Research_Data/Rhoades_Projects/RestingStatefMRI/Raw_Data/Sub_019/Sub_019_01_anat_warped/junk.SSwarper.EBdyxzaeQEc_TAL5_Allin.nii

Fatal Signal 11 (SIGSEGV) received
     IW3D_setup_for_improvement
    IW3D_warpomatic
   IW3D_warp_s2bim
  3dQwarp
 Bottom of Debug Stack

Thanks



Edited 2 time(s). Last edit at 07/02/2020 01:48PM by kxd344.
Subject Author Posted

Errors with @SSWarper Fatal Signal 11 (SIGSEGV) received

kxd344 June 29, 2020 01:14PM

Re: Errors with @SSWarper Fatal Signal 11 (SIGSEGV) received

ptaylor June 29, 2020 02:01PM

Re: Errors with @SSWarper Fatal Signal 11 (SIGSEGV) received

kxd344 June 29, 2020 04:31PM

Re: Errors with @SSWarper Fatal Signal 11 (SIGSEGV) received

ptaylor June 29, 2020 04:45PM

Re: Errors with @SSWarper Fatal Signal 11 (SIGSEGV) received

kxd344 June 29, 2020 06:18PM

Re: Errors with @SSWarper Fatal Signal 11 (SIGSEGV) received

ptaylor June 29, 2020 07:51PM

Re: Errors with @SSWarper Fatal Signal 11 (SIGSEGV) received

kxd344 June 29, 2020 08:04PM

Re: Errors with @SSWarper Fatal Signal 11 (SIGSEGV) received Attachments

ptaylor June 29, 2020 10:21PM

Re: Errors with @SSWarper Fatal Signal 11 (SIGSEGV) received

kxd344 July 01, 2020 12:20PM

Re: Errors with @SSWarper Fatal Signal 11 (SIGSEGV) received

ptaylor July 01, 2020 05:22PM

Re: Errors with @SSWarper Fatal Signal 11 (SIGSEGV) received

rick reynolds July 01, 2020 10:13PM

Re: Errors with @SSWarper Fatal Signal 11 (SIGSEGV) received

kxd344 July 02, 2020 01:19PM

Re: Errors with @SSWarper Fatal Signal 11 (SIGSEGV) received

rick reynolds July 02, 2020 02:09PM

Re: @SSWarper Fatal Signal 11 (SIGSEGV) & 3dAllineate -cmass

kxd344 July 02, 2020 04:23PM

Re: Errors with @SSWarper Fatal Signal 11 (SIGSEGV) received

kxd344 July 08, 2020 02:04PM