AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 09, 2020 04:56PM
Hi,

I would like to check the alignment of data by looking at the APQC-HTML file, but it only contains three QC blocks: 'regr', 'warns', 'qsumm'. Blocks like 've2a' are missing. Since the same '-html_review_style pythonic' command worked well with the other fMRI dataset of mine, I don't know what's wrong with my code.
The afni_proc.py command I used is:
afni_proc.py \
-subj_id sub02 \
-script proc.sub02.r2 \
-out_dir sub02.r2.results \
-dsets S02_run2+orig.HEAD \
-copy_anat S02_t1_deob+orig \
-anat_has_skull yes \
-blocks despike tshift align volreg mask scale regress \
-tcat_remove_first_trs 0 \
-tshift_interp -Fourier \
-volreg_align_to MIN_OUTLIER \
-align_opts_aea \
-giant_move -cmass cmass \
-volreg_align_e2a \
-regress_stim_times 01.txt 02.txt 03.txt 04.txt 05.txt 06.txt 07.txt 08.txt 09.txt 10.txt 11.txt 12.txt 13.txt 14.txt 15.txt 16.txt 17.txt 18.txt 19.txt 20.txt 21.txt 22.txt 23.txt 24.txt 25.txt filler.txt \
-regress_local_times \
-regress_stim_labels 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 filler \
-regress_basis 'BLOCK(2,1)' \
-regress_censor_motion 0.3 \
-regress_censor_outliers 0.1 \
-regress_opts_3dD \
-jobs 4 \
-regress_run_clustsim no \
-regress_est_blur_errts \
-regress_est_blur_epits \
-html_review_style pythonic

Thanks a lot.
-Joy
Subject Author Posted

Errors with QC blocks in APQC-html document

joy0617 July 09, 2020 04:56PM

Re: Errors with QC blocks in APQC-html document

ptaylor July 09, 2020 05:03PM