AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 09, 2020 08:48AM
You should have datasets that end in _warp2std_ns.nii.gz and _warp2std_nsu.nii.gz in your animal warper output directory that correspond to the skull stripped (no skull) and a unifized version of that.

For T2 images to align to a T1 template (or vice versa), you need a cost function that looks for the reverse contrast. The lpc method works well for this. Add the option "-cost lpc" or "-cost lpc+ZZ".
Subject Author Posted

Help with diffeomorphic warping script Attachments

jreyelts July 27, 2020 11:11PM

Re: Help with diffeomorphic warping script

ptaylor July 28, 2020 09:10AM

Re: Help with diffeomorphic warping script

jreyelts July 28, 2020 01:39PM

Re: Help with diffeomorphic warping script

ptaylor July 28, 2020 02:46PM

Re: Help with diffeomorphic warping script

Daniel Glen July 29, 2020 05:37PM

Re: Help with diffeomorphic warping script

jreyelts July 29, 2020 11:33PM

Re: Help with diffeomorphic warping script

ptaylor July 30, 2020 09:29AM

Re: Help with diffeomorphic warping script

jreyelts August 08, 2020 07:33PM

Re: Help with diffeomorphic warping script

Daniel Glen August 09, 2020 08:48AM

Re: Help with diffeomorphic warping script

ptaylor August 10, 2020 02:54PM