Hello all,
Have recently downloaded and prepped AFNI on new Win10 machine (use WSL), which I've done once before. In early part of install, following documentation's instructions, typed 'afni' and the GUI popped up correctly. And yes, have xLaunch installed and run that before running Ubuntu. Display number was set to -1 to let xLaunch choose automatically. I'm also running two monitors.
Also made sure that I had/did this:
echo "export DISPLAY=:0.0" >> ~/.bashrc
echo "setenv DISPLAY :0.0" >> ~/.cshrc
echo "export NO_AT_BRIDGE=1" >> ~/.bashrc
echo "setenv NO_AT_BRIDGE 1" >> ~/.cshrc
Output of 'afni_system_check.py -check_all' is as follows:
PatrickDesktop:~> afni_system_check.py -check_all
-------------------------------- general ---------------------------------
architecture: 64bit ELF
system: Linux
release: 4.19.104-microsoft-standard
version: #1 SMP Wed Feb 19 06:37:35 UTC 2020
-- failed platform.linux_dist()
distribution: ubuntu 20.04 focal
number of CPUs: 12
apparent login shell: tcsh
shell RC file: .cshrc (exists)
--------------------- AFNI and related program tests ---------------------
which afni : /home/patreyes/abin/afni
afni version : Precompiled binary linux_ubuntu_16_64: Aug 4 2020
: AFNI_20.2.10 'Aulus Vitellius'
AFNI_version.txt : AFNI_20.2.10, linux_ubuntu_16_64, Aug 04 2020
which python : /usr/bin/python
python version : 3.8.2
which R : /usr/bin/R
R version : R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
which tcsh : /usr/bin/tcsh
instances of various programs found in PATH:
afni : 1 (/home/patreyes/abin/afni)
R : 1 (/usr/bin/R)
python : 1 (/usr/bin/python3.8)
python2 : 0
python3 : 1 (/usr/bin/python3.8)
** have python3 but not python2
testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
3dClustSim : success
3dMVM : success
checking for R packages...
rPkgsInstall -pkgs ALL -check : success
R RHOME : /usr/lib/R
checking for $HOME files...
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found
------------------------------ python libs -------------------------------
** failed to load module PyQt4
-- PyQt4 is no longer needed for an AFNI bootcamp
++ module loaded: matplotlib.pyplot
module file : /usr/lib/python3/dist-packages/matplotlib/pyplot.py
-------------------------------- env vars --------------------------------
PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/c/Program:Files/WindowsApps/CanonicalGroupLimited.UbuntuonWindows_2004.2020.424.0_x64__79rhkp1fndgsc:/mnt/c/Python38/Scripts/:/mnt/c/Python38/:/mnt/c/Program:Files/dotnet/:/mnt/c/Users/:/mnt/c/Program:Files/Microsoft:SQL:Server/130/Tools/Binn/:/mnt/c/Program:Files/Microsoft:SQL:Server/Client:SDK/ODBC/170/Tools/Binn/:/mnt/c/Program:Files/PsychoPy3:/mnt/c/Program:Files/PsychoPy3/DLLs:/mnt/c/Users/reyes/AppData/Roaming/Python/Python36/Scripts:/mnt/c/Users/reyes/AppData/Roaming/Python/Python36:/mnt/c/Program:Files/PsychoPy3/Lib/site-packages:/mnt/c/Program:Files/PsychoPy3/Scripts:/mnt/c/Program:Files/NVIDIA:Corporation/NVIDIA:NvDLISR:/mnt/c/Program:Files/Git/cmd:/mnt/c/WINDOWS/system32:/mnt/c/WINDOWS:/mnt/c/WINDOWS/System32/Wbem:/mnt/c/WINDOWS/System32/WindowsPowerShell/v1.0/:/mnt/c/WINDOWS/System32/OpenSSH/:/mnt/c/ProgramData/chocolatey/bin:/mnt/c/Program:Files/Amazon/AWSCLIV2/:/mnt/c/Users/reyes/AppData/Local/Microsoft/WindowsApps:/mnt/c/Users/reyes/AppData/Local/Programs/Microsoft:VS:Code/bin:/mnt/c/Users/reyes/AppData/Roaming/Python/Python36/site-packages:/home/patreyes/abin
PYTHONPATH =
R_LIBS = /home/patreyes/R
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =
------------------------------ data checks -------------------------------
data dir : found AFNI_data6 under $HOME
top history: 20 Feb 2020 [rickr]: updated FT_analysis examples
data dir : found AFNI_demos under $HOME
top history: 22 Oct 2019 [discoraj]: added Cluster Explorer Demo
data dir : found suma_demo under $HOME
top history: NONE FOUND
data dir : found afni_handouts under $HOME
atlas : found TT_N27+tlrc under /home/patreyes/abin
------------------------------ OS specific -------------------------------
which apt-get : /usr/bin/apt-get
apt-get version : apt 2.0.2 (amd64)
have Ubuntu system: ubuntu 20.04 focal
have Ubuntu afni : Precompiled binary linux_ubuntu_16_64: Aug 4 2020
========================= summary, please fix: =========================
* have python version 3.8.2, but a few programs need 2.7.x
But now, when try 'afni' receive just this back (again, even after a few restarts and making sure i do xLaunch first prior):
PatrickDesktop:~> afni
Precompiled binary linux_ubuntu_16_64: Aug 4 2020 (Version AFNI_20.2.10 'Aulus Vitellius')
** Version check disabled: AFNI_VERSION_CHECK forbids
Thanks go to A Martin for much encouragement
Initializing: X11Error: Can't open display: :0.0
++ AFNI is detached from terminal.
Am unsure what happened between first succesful GUI launch to now, any help appreciated.
