AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 07, 2020 06:08PM
Hi-

It is odd that your template space is "ORIG"... What template did you use?

I certainly don't think photoshop should be used...

To be clear, are you trying to adapt your normalized (in the sense of "aligned") functional to your template space? If so, you can use:
# copy your file (just to keep the original unchanged) to some new name
3dcopy FUNC_DSET FUNC_DSET_NEW
# change the header info in the new file to have it be "ORIG" space, like your template
3drefit -space ORIG FUNC_DSET_NEW
If, instead, you want make your template be in "TLRC" space, you can do the same things as above just changing "ORIG" -> "TLRC" (copy the template, and then use 3drefit to change its header info).

Does that sort out what you want, or is it there something else, too?

-pt
Subject Author Posted

Overlaying 3dttest results over anatomical and template for mouse brain Attachments

kbandrew August 07, 2020 04:50PM

Re: Overlaying 3dttest results over anatomical and template for mouse brain

ptaylor August 07, 2020 06:08PM

Re: Overlaying 3dttest results over anatomical and template for mouse brain Attachments

kbandrew August 08, 2020 05:53PM

Re: Overlaying 3dttest results over anatomical and template for mouse brain

ptaylor August 10, 2020 09:58PM

Re: Overlaying 3dttest results over anatomical and template for mouse brain

Daniel Glen August 11, 2020 03:13PM

Re: Overlaying 3dttest results over anatomical and template for mouse brain

kbandrew August 16, 2020 07:01AM

Re: Overlaying 3dttest results over anatomical and template for mouse brain

ptaylor August 17, 2020 08:02AM