AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Doughboys
August 24, 2020 08:09PM
Salut pt!
The problem occurred when changing from
Version AFNI_20.1.06 'Otho'
to
Version AFNI_20.2.12 'Aulus Vitellius'

the version of the nmt is 1.2
and my command was: 

@animal_warper -input /Oliver2019_02_02/anatT1_deob.nii.gz -base /nmt_1.2/NMT_SS.nii.gz -atlas /nmt_1.2/D99_in_NMT_with_WM.nii.gz  -outdir 
/7_animal_warper/Oliver2019_02_02 -ok_to_exist


the original anatomical image was previously centred to 0 based on the same images "deoblique" and "skullstriped".
I am not sure if I understand correctly the command -center_out native, but I also tried with this added to the @animal_warper thinking that it might change something since my anatomical image was already pre-centred. Apparently not =)

Thanks again pt!
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Subject Author Posted

New version of @animal_warper

Doughboys August 24, 2020 06:40PM

Re: New version of @animal_warper

ptaylor August 24, 2020 07:27PM

Re: New version of @animal_warper

Doughboys August 24, 2020 08:09PM

Re: New version of @animal_warper

ptaylor August 25, 2020 10:05AM

Re: New version of @animal_warper

Doughboys August 26, 2020 09:33AM