Salut pt!
The problem occurred when changing from
Version AFNI_20.1.06 'Otho'
to
Version AFNI_20.2.12 'Aulus Vitellius'
the version of the nmt is 1.2
and my command was:
@animal_warper -input /Oliver2019_02_02/anatT1_deob.nii.gz -base /nmt_1.2/NMT_SS.nii.gz -atlas /nmt_1.2/D99_in_NMT_with_WM.nii.gz -outdir
/7_animal_warper/Oliver2019_02_02 -ok_to_exist
the original anatomical image was previously centred to 0 based on the same images "deoblique" and "skullstriped".
I am not sure if I understand correctly the command -center_out native, but I also tried with this added to the @animal_warper thinking that it might change something since my anatomical image was already pre-centred. Apparently not =)
Thanks again pt!
