AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
September 18, 2020 03:53PM
Hello! I've read through a few forum posts and have tried redoing the WSL steps. I originally tried with WSL 2 and it wouldn't work. I swapped to WSL 1 and it's still not working. Additionally, I ensure that I open/setup XForward before opening Ubuntu and I am working from Windows OS (v10.0.19041). Here is the output! I appreciate any and all help.

hananguzman@Hanan:~$ afni_system_check.py -check_all
-------------------------------- general ---------------------------------
architecture:         64bit
system:               Linux
release:              4.19.104-microsoft-standard
version:              #1 SMP Wed Feb 19 06:37:35 UTC 2020
distribution:         Ubuntu 20.04 focal
number of CPUs:       8
apparent login shell: bash
shell RC file:        .bashrc (exists)

--------------------- AFNI and related program tests ---------------------
which afni           : /home/hananguzman/abin/afni
afni version         : Precompiled binary linux_ubuntu_16_64: Sep  1 2020
                     : AFNI_20.2.16 'Aulus Vitellius'
AFNI_version.txt     : AFNI_20.2.16, linux_ubuntu_16_64, Sep 01 2020
which python         : /usr/bin/python
python version       : 2.7.18rc1
which R              : /usr/bin/R
R version            : R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
which tcsh           : /usr/bin/tcsh

instances of various programs found in PATH:
    afni    : 1   (/home/hananguzman/abin/afni)
    R       : 1   (/usr/bin/R)
    python  : 1   (/usr/bin/python2.7)
    python2 : 1   (/usr/bin/python2.7)
    python3 : 1   (/usr/bin/python3.8)


testing ability to start various programs...
    afni                 : success
    suma                 : success
    3dSkullStrip         : success
    uber_subject.py      : success
    3dAllineate          : success
    3dRSFC               : success
    SurfMesh             : success
    3dClustSim           : success
    3dMVM                : success

checking for R packages...
    rPkgsInstall -pkgs ALL -check : success

R RHOME : /usr/lib/R

checking for $HOME files...
    .afnirc                   : found
    .sumarc                   : found
    .afni/help/all_progs.COMP : found

------------------------------ python libs -------------------------------
** failed to load module PyQt4
-- PyQt4 is no longer needed for an AFNI bootcamp

** failed to load module matplotlib.pyplot
-- matplotlib.pyplot is not required, but is desirable

-------------------------------- env vars --------------------------------
PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/c/Program Files/WindowsApps/CanonicalGroupLimited.UbuntuonWindows_2004.2020.812.0_x64__79rhkp1fndgsc:/mnt/c/Program Files (x86)/Common Files/Oracle/Java/javapath:/mnt/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/iCLS/:/mnt/c/Program Files/Intel/Intel(R) Management Engine Components/iCLS/:/mnt/c/Windows/system32:/mnt/c/Windows:/mnt/c/Windows/System32/Wbem:/mnt/c/Windows/System32/WindowsPowerShell/v1.0/:/mnt/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/DAL:/mnt/c/Program Files/Intel/Intel(R) Management Engine Components/DAL:/mnt/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/IPT:/mnt/c/Program Files/Intel/Intel(R) Management Engine Components/IPT:/mnt/c/Program Files (x86)/Common Files/Seagate/VirtualFile/:/mnt/c/Program Files (x86)/Common Files/Seagate/VirtualFile64/:/mnt/c/Program Files (x86)/Common Files/Seagate/SnapAPI/:/mnt/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common:/mnt/c/Program Files/NVIDIA Corporation/NVIDIA NvDLISR:/mnt/c/WINDOWS/system32:/mnt/c/WINDOWS:/mnt/c/WINDOWS/System32/Wbem:/mnt/c/WINDOWS/System32/WindowsPowerShell/v1.0/:/mnt/c/WINDOWS/System32/OpenSSH/:/mnt/c/WINDOWS/system32:/mnt/c/WINDOWS:/mnt/c/WINDOWS/System32/Wbem:/mnt/c/WINDOWS/System32/WindowsPowerShell/v1.0/:/mnt/c/WINDOWS/System32/OpenSSH/:/mnt/c/Users/hanan/AppData/Local/Microsoft/WindowsApps:/snap/bin:/home/hananguzman/abin

PYTHONPATH =
R_LIBS = /home/hananguzman/R

LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =

------------------------------ data checks -------------------------------
data dir : found AFNI_data6   under $HOME
           top history: 20 Feb 2020 [rickr]: updated FT_analysis examples
data dir : found AFNI_demos   under $HOME
           top history: 22 Oct 2019 [discoraj]: added Cluster Explorer Demo
data dir : found suma_demo    under $HOME
           top history: ...s_New/data/Build_tmp on Mon Mar  4 11:56:45 EST 2013
data dir : found afni_handouts under $HOME
atlas    : found TT_N27+tlrc  under /home/hananguzman/abin

------------------------------ OS specific -------------------------------
which apt-get        : /usr/bin/apt-get
apt-get version      : apt 2.0.2ubuntu0.1 (amd64)

have Ubuntu system: Ubuntu 20.04 focal
have Ubuntu afni  : Precompiled binary linux_ubuntu_16_64: Sep  1 2020

=========================  summary, please fix:  =========================
*  just be aware: login shell 'bash', but our code examples use 'tcsh'

hananguzman@Hanan:~$ afni
Precompiled binary linux_ubuntu_16_64: Sep  1 2020 (Version AFNI_20.2.16 'Aulus Vitellius')


** Version check disabled: AFNI_VERSION_CHECK forbids
Thanks go to BD Ward for great efforts

Initializing: X11Error: Can't open display: :0.0
++ AFNI is detached from terminal.
hananguzman@Hanan:~$ suma

suma:
     No input specified, loading some toy surfaces...
     Use '.' and ',' to cycle between them.
     See suma -help for assistance.

Error: Can't open display: :0.0
hananguzman@Hanan:~$
Subject Author Posted

X11 Error: Can't open display: :0.0

hananguzman September 18, 2020 03:53PM

Re: X11 Error: Can't open display: :0.0

ptaylor September 21, 2020 09:24PM