AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Fabian
October 02, 2020 10:32PM
Hi Everyone,
I am new using afni and the all the suit. To the point, I have several NHP MRIs but in particular I am interesting to do reconstruction of recording sites by electrophysiology. I applied the @animal_warper to the example_subject no problem everything was ok, when I applied to my MRIs was totally distorted (I tested with 2 MRI). Check with detail I figured out that the order (sagittal, coronal, axial ) are uncorrected in my mri, I corrected using 3drefit -orient, I run again but still distorted then I figured out the distortion start at this level
Matrix, aff xform : T1_shft_al2std_mat.aff12.1D
Input, aff-xformed to base (orig res) : T1_shft_al2std.nii.gz
I attach the figure afni display
Any help I will appreciate.
Fabian
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open | download - mri_al2std.png (136.3 KB)
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Subject Author Posted

@animal_warper can not align atlar D99 Atlas Attachments

Fabian October 02, 2020 10:32PM

Re: @animal_warper can not align atlar D99 Atlas

ptaylor October 05, 2020 03:09PM

Re: @animal_warper can not align atlar D99 Atlas Attachments

Fabian October 05, 2020 11:33PM

Re: @animal_warper can not align atlar D99 Atlas

ptaylor October 06, 2020 09:19AM

Re: @animal_warper can not align atlar D99 Atlas Attachments

Fabian October 07, 2020 12:35AM

Re: @animal_warper can not align atlar D99 Atlas

ptaylor October 07, 2020 10:32AM

Re: @animal_warper can not align atlar D99 Atlas Attachments

Fabian October 08, 2020 10:35PM

Re: @animal_warper can not align atlar D99 Atlas

ptaylor October 09, 2020 09:14AM

Re: @animal_warper can not align atlar D99 Atlas Attachments

Fabian October 13, 2020 09:26AM

Re: @animal_warper can not align atlar D99 Atlas

ptaylor October 13, 2020 09:55AM