Hi Taylor,
Yes, the monkeys are in sphinx position and I figured out when I checked them by using afni:
I attach the afni display for the T1.nii.gz
First row, it is the original structural MRI
Second row after applying 3drefit -orient RIP T1.nii.gz
and I applied for both the @animal_warper I have the same distortion and unsuccessful in the template overlay
output afni -version : Precompiled binary linux_ubuntu_16_64: Aug 21 2020 (Version AFNI_20.2.14 'Aulus Vitellius')
Any thoughts I will appreciate
Thanks
Fabian