AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
October 07, 2020 12:35AM
Hi Taylor,
First, this is the code I used:
 @animal_warper  -input T1.nii.gz  -base /home/maestro/Documents/Software/NMT-master/NMT_v1.2/NMT.nii.gz  -atlas /home/maestro/Documents/Software/NMT-master/NMT_v1.2/atlases/D99_atlas/D99_atlas_1.2a_al2NMT.nii.gz

the output of 3dWarp -deoblique -disp_obl_xform_only T1.nii.gz
++ 3dWarp: AFNI version=AFNI_20.2.14 (Aug 21 2020) [64-bit]
++ Authored by: RW Cox
# mat44 Obliquity Transformation ::
      1.000000      0.000000      0.000000       0.000000
      0.000000      1.000000      0.000000       0.000000
      0.000000      0.000000      1.000000       0.000000

Here the output of the code you send me.
Looks there are some issues with the coordinates.
Any thoughts
Thanks for help and time
Fabian
Attachments:
open | download - img_overlap_FINAL2.jpg (55.3 KB)
Subject Author Posted

@animal_warper can not align atlar D99 Atlas Attachments

Fabian October 02, 2020 10:32PM

Re: @animal_warper can not align atlar D99 Atlas

ptaylor October 05, 2020 03:09PM

Re: @animal_warper can not align atlar D99 Atlas Attachments

Fabian October 05, 2020 11:33PM

Re: @animal_warper can not align atlar D99 Atlas

ptaylor October 06, 2020 09:19AM

Re: @animal_warper can not align atlar D99 Atlas Attachments

Fabian October 07, 2020 12:35AM

Re: @animal_warper can not align atlar D99 Atlas

ptaylor October 07, 2020 10:32AM

Re: @animal_warper can not align atlar D99 Atlas Attachments

Fabian October 08, 2020 10:35PM

Re: @animal_warper can not align atlar D99 Atlas

ptaylor October 09, 2020 09:14AM

Re: @animal_warper can not align atlar D99 Atlas Attachments

Fabian October 13, 2020 09:26AM

Re: @animal_warper can not align atlar D99 Atlas

ptaylor October 13, 2020 09:55AM