Hi Taylor,
First, this is the code I used:
@animal_warper -input T1.nii.gz -base /home/maestro/Documents/Software/NMT-master/NMT_v1.2/NMT.nii.gz -atlas /home/maestro/Documents/Software/NMT-master/NMT_v1.2/atlases/D99_atlas/D99_atlas_1.2a_al2NMT.nii.gz
the output of 3dWarp -deoblique -disp_obl_xform_only T1.nii.gz
++ 3dWarp: AFNI version=AFNI_20.2.14 (Aug 21 2020) [64-bit]
++ Authored by: RW Cox
# mat44 Obliquity Transformation ::
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
Here the output of the code you send me.
Looks there are some issues with the coordinates.
Any thoughts
Thanks for help and time
Fabian
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