AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 08, 2020 10:40AM
Hi, Christine-

OK, it looks like the symbolic link exists. Just to verify it, what is the output of:
ls -l /usr/lib/x86_64-linux-gnu/libgsl.so.23
?

Since the GSL link exists, I wonder if the problem is with the GSL installation itself. I also find it odd that you would have to install libglu1 separately, because the main installation command has "libglu1-mesa-dev" as part of its installation, and I would just assume that plain ol' libglu1 would be a dependency of that... Just to rule out something like that, could you please run these three commands again via copy+paste into the terminal:
sudo add-apt-repository universe

sudo apt-get update

(This is the main installation command *without* the R part, because you have been working on that separately):
sudo apt-get install -y tcsh xfonts-base libssl-dev       \
                        python-is-python3                 \
                        python3-matplotlib                \
                        gsl-bin netpbm gnome-tweak-tool   \
                        libjpeg62 xvfb xterm vim curl     \
                        gedit evince eog                  \
                        libglu1-mesa-dev libglw1-mesa     \
                        libxm4 build-essential            \
                        libcurl4-openssl-dev libxml2-dev  \
                        libgfortran-8-dev libgomp1        \
                        gnome-terminal nautilus           \
                        gnome-icon-theme-symbolic         \
                        firefox xfonts-100dpi

If you run afni_system_check.py after that, are there still errors?

--pt
Subject Author Posted

error in installing AFNI on Ubuntu 20.04

cslaw October 05, 2020 08:42PM

Re: error in installing AFNI on Ubuntu 20.04

ptaylor October 06, 2020 09:32AM

Re: error in installing AFNI on Ubuntu 20.04

cslaw October 08, 2020 01:19AM

Re: error in installing AFNI on Ubuntu 20.04

ptaylor October 08, 2020 10:40AM

Re: error in installing AFNI on Ubuntu 20.04

rick reynolds October 08, 2020 04:22PM

Re: error in installing AFNI on Ubuntu 20.04

cslaw October 08, 2020 07:40PM

Re: error in installing AFNI on Ubuntu 20.04

rick reynolds October 15, 2020 02:10PM

Re: error in installing AFNI on Ubuntu 20.04

rick reynolds October 15, 2020 03:22PM