AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
October 08, 2020 10:56AM
Hi-

Sorry, that previous message slipped off my radar.

In this current case, you aren't using the standard mesh (using a created 140 instead of 141 one). Can I ask why you are using a self-created mesh that is very close to one standard mesh, but not a standard mesh?

In terms of the SurfSmooth error, let's test running SurfSmooth on your computer. In the AFNI Bootcamp dataset*, can you go to this directory, "AFNI_data6/FT_analysis/FT/SUMA/", and then run this command by copy+pasting into the terminal:
SurfSmooth \
     -spec std.141.FT_lh.spec \
     -surf_A std.141.lh.smoothwm.gii \
     -met HEAT_07  \
     -input std.141.lh.sulc.niml.dset \
     -target_fwhm 6 \
     -Niter -1 \
     -output TEST.niml.dset
Does that work for you?

--pt


-----------------------------------------
* If you don't have the Bootcamp directory-- eek! -- you can get+unpack it in your home directory via:
curl -O [afni.nimh.nih.gov]
tar xvzf CD.tgz
cd CD
tcsh s2.cp.files . ~
cd ..
Subject Author Posted

Still with SurfSmooth error

franciscoara October 07, 2020 09:21PM

Re: Still with SurfSmooth error

ptaylor October 08, 2020 10:56AM

Re: Still with SurfSmooth error

Daniel Glen October 08, 2020 11:59AM

Re: Still with SurfSmooth error

franciscoara October 09, 2020 08:19PM

Re: Still with SurfSmooth error

ptaylor October 09, 2020 09:13PM

Re: Still with SurfSmooth error

franciscoara October 14, 2020 12:41PM

Re: Still with SurfSmooth error

ptaylor October 14, 2020 05:01PM

Re: Still with SurfSmooth error

Daniel Glen October 14, 2020 08:56PM