AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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jef
October 14, 2020 09:06AM
Thank you! I have a follow up question. I successfully ran the script with a small batch of participants, but when I try to run it for all subjects, I receive the error

[1] "Great, test run passed at voxel (30, 54, 45)!"
[1] "Start to compute 91 slices along Z axis. You can monitor the progress"
[1] "and estimate the total run time as shown below."
[1] "10/13/20 13:58:15.452"
Error: vector memory exhausted (limit reached?)
Execution halted

I'm guessing this is a local machine issue with memory, but I wanted to check first to see if you had any suggestions on how to best trouble shoot this error or any tips to allow larger 3dlme batches to run on a local machine.

Thanks again!
Subject Author Posted

error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 09, 2020 08:26AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

ptaylor October 09, 2020 09:16AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 12, 2020 10:40AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

ptaylor October 12, 2020 01:21PM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 12, 2020 06:55PM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

gang October 12, 2020 07:16PM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 12, 2020 08:40PM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

gang October 12, 2020 11:06PM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 13, 2020 10:13AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 13, 2020 10:42AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

gang October 13, 2020 11:13AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 14, 2020 09:06AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

gang October 14, 2020 11:53AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 15, 2020 10:55AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

rick reynolds October 19, 2020 11:11AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 21, 2020 11:25AM