AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 28, 2020 10:58PM
Hi Taylor,
The T1w from the current mri. I did before
3drefit -deoblique -orient LSP T1w.nii.gz
Because the orientation is like the image you see at the end.
Horizontal - Sagittal - Coronal view from afni.
If I applied 3drefit -deoblique -orient LSP then the orientation is agreed with the view in afni
I applied to the original mri
3dWarp -deoblique -disp_obl_xform_only DSET_NAME

output:
3.166011.2020102615023796294676121.0.0.0.nii.gz 
++ 3dWarp: AFNI version=AFNI_20.2.14 (Aug 21 2020) [64-bit]
++ Authored by: RW Cox
# mat44 Obliquity Transformation ::
      1.000000      0.000001     -0.000000      -0.000114
     -0.000001      0.990024     -0.140901      -5.472626
      0.000000      0.140901      0.990024     -18.687933

The original is from nifti file. The scanner we use is a siemmens prima 3T , the data is saved in dicom and nifti, I downloaded the nifti

Fabian
Attachments:
open | download - out1.jpg (7.1 KB)
Subject Author Posted

3d reorientation and reslice coronal view

Fabian October 28, 2020 03:32PM

Re: 3d reorientation and reslice coronal view

ptaylor October 28, 2020 03:51PM

Re: 3d reorientation and reslice coronal view Attachments

Fabian October 28, 2020 05:39PM

Re: 3d reorientation and reslice coronal view

ptaylor October 28, 2020 06:52PM

Re: 3d reorientation and reslice coronal view Attachments

Fabian October 28, 2020 10:58PM

Re: 3d reorientation and reslice coronal view

ptaylor October 29, 2020 06:57AM

Re: 3d reorientation and reslice coronal view

Fabian October 30, 2020 01:22PM