AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 06, 2021 07:27PM
Hi, Stuart--

Thanks for sharing the data.

It is a slightly odd dset in that there is a *lot* of nonbrain material, down to the shoulders. It also has some obliquity, which may/may not be a major issue.

I ran the following commands, and the resulting images look pretty good, though:
3dcopy anat+orig. anat_deob.nii

3drefit -deoblique anat_deob.nii

@SSwarper    \
    -input anat_deob.nii \
    -base MNI152_2009_template_SSW.nii.gz \
    -subid sub-001 \
    -odir o.aw_sub-001 \
    -giant_move

How does that seem?

--pt
Attachments:
open | download - QC_anatQQ.sub-001.jpg (1.04 MB)
open | download - QC_anatSS.sub-001.jpg (2.11 MB)
Subject Author Posted

@SSwarper crash

stuart.white December 22, 2020 04:20PM

Re: @SSwarper crash

ptaylor December 22, 2020 04:34PM

Re: @SSwarper crash Attachments

stuart.white December 28, 2020 10:56AM

Re: @SSwarper crash

ptaylor December 29, 2020 04:12PM

Re: @SSwarper crash

stuart.white January 04, 2021 12:54PM

Re: @SSwarper crash

ptaylor January 05, 2021 09:42AM

Re: @SSwarper crash

stuart.white January 05, 2021 10:38AM

Re: @SSwarper crash Attachments

ptaylor January 06, 2021 07:27PM

Re: @SSwarper crash

stuart.white January 07, 2021 12:33PM

Re: @SSwarper crash

stuart.white January 13, 2021 10:42AM

Re: @SSwarper crash

ptaylor January 13, 2021 11:05AM

Re: @SSwarper crash

stuart.white January 13, 2021 02:00PM

Re: @SSwarper crash

ptaylor January 13, 2021 09:47PM

Re: @SSwarper crash

rick reynolds January 13, 2021 10:45PM

Re: @SSwarper crash

ptaylor January 13, 2021 10:55PM

Re: @SSwarper crash

rick reynolds January 14, 2021 11:40AM

Re: @SSwarper crash

stuart.white January 14, 2021 01:41PM

Re: @SSwarper crash

rick reynolds January 15, 2021 10:03AM

Re: @SSwarper crash

stuart.white January 21, 2021 10:43AM