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January 04, 2021 02:13PM
Hello experts,
I have preprocessed my data using fmriprep. However, for first and second level processing I would like to use AFNI. (I have historically used SPM, but am switching to AFNI for a number of reasons, namely flexibility of second level models, ability to see the data, cluster algorithms for multiple comparisons - so I am relatively new to AFNI.) I am wondering if it is possible to use afni_proc.py with data that have been preprocessed in fmriprep. How would one specify the minimally preprocessed files here, as well as the regressors for first-level analysis? Another option that I have been considering is implementing an afni processing pipeline using nipype, since something similar has been published using fsl (by Esteban et al. 2019). Your input is much appreciated. Thanks!
Subject Author Posted

fmriprep to afni_proc.py?

dani2 January 04, 2021 02:13PM

Re: fmriprep to afni_proc.py?

ptaylor January 05, 2021 09:19AM

Re: fmriprep to afni_proc.py?

dani2 January 05, 2021 01:10PM

Re: fmriprep to afni_proc.py?

Peter Molfese January 05, 2021 09:56PM

Re: fmriprep to afni_proc.py?

dani2 January 14, 2021 10:32AM

Re: fmriprep to afni_proc.py?

ptaylor January 14, 2021 11:51AM

Re: fmriprep to afni_proc.py?

MXD2019 June 16, 2021 02:20PM

Re: fmriprep to afni_proc.py?

ptaylor June 16, 2021 04:05PM



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